Description:
PUERTO RICAN IN PUERTO RICO
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Repository
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NHGRI Sample Repository for Human Genetic Research
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| Subcollection |
NHGRI Sample Repository for Human Genetic Research |
| Quantity |
25 µg |
| Quantitation Method |
Please see our FAQ |
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Biopsy Source
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Peripheral vein
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Cell Type
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B-Lymphocyte
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Tissue Type
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Blood
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Transformant
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Epstein-Barr Virus
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Sample Source
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DNA from LCL
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Country of Origin
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PUERTO RICO
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Family Member
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3
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Family History
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N
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Relation to Proband
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child
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Species
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Homo sapiens
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Common Name
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Human
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Remarks
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| Remarks |
At least six out of eight great-grandparents of the child in this trio were born in Puerto Rico. |
| Shafin K, Pesout T, Lorig-Roach R, Haukness M, Olsen HE, Bosworth C, Armstrong J, Tigyi K, Maurer N, Koren S, Sedlazeck FJ, Marschall T, Mayes S, Costa V, Zook JM, Liu KJ, Kilburn D, Sorensen M, Munson KM, Vollger MR, Monlong J, Garrison E, Eichler EE, Salama S, Haussler D, Green RE, Akeson M, Phillippy A, Miga KH, Carnevali P, Jain M, Paten B, Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes Nature biotechnology38:1044-1053 2020 |
| PubMed ID: 32686750 |
| |
| Heft IE, Mostovoy Y, Levy-Sakin M, Ma W, Stevens AJ, Pastor S, McCaffrey J, Boffelli D, Martin DI, Xiao M, Kennedy MA, Kwok PY, Sikela JM, The Driver of Extreme Human-Specific Olduvai Repeat Expansion Remains Highly Active in the Human Genome Genetics38:1044-1053 2019 |
| PubMed ID: 31754017 |
| |
| Carpenter BL, Zhou W, Madaj Z, DeWitt AK, Ross JP, Grønbæk K, Liang G, Clark SJ, Molloy PL, Jones PA, Mother-child transmission of epigenetic information by tunable polymorphic imprinting Proceedings of the National Academy of Sciences of the United States of America38:1044-1053 2018 |
| PubMed ID: 30509985 |
| |
| Chen X, Li D, ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data Bioinformatics (Oxford, England)35:3913-3922 2018 |
| PubMed ID: 30895294 |
| |
| Wong KHY1, Levy-Sakin M1, Kwok PY2,3,4., De novo human genome assemblies reveal spectrum of alternative haplotypes in diverse populations Nature Communications9:3913-3922 2018 |
| PubMed ID: 30072691 |
| Split Ratio |
1:3 |
| Temperature |
37 C |
| Percent CO2 |
5% |
| Percent O2 |
AMBIENT |
| Medium |
Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent |
| Serum |
15% fetal bovine serum Not Inactivated |
| Substrate |
None specified |
| Subcultivation Method |
dilution - add fresh medium |
| Supplement |
- |
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