HAPMAPPT02
96 WELL PLATE OF DNA SAMPLES
Description:
INTERNATIONAL HAPMAP PROJECT - JAPANESE IN TOKYO, JAPAN AND HAN CHINESE IN BEIJING, CHINA (I)
Aliquot Size:
25 µg each
Sex:
Males: 45 Females: 45
Brief Description:
The HAPMAPPT02 plate of 90 individual samples, includes 45 Japanese in Tokyo and 45 Han Chinese in Beijing. In addition, there are 5 duplicated samples and 1 buffer control. The concentration of each DNA sample to be plated is normalized and then this concentration is verified. The DNA concentration is 250 ng/µl. Once all samples are in place, a DNA fingerprint is determined for each sample to verify the identity on the plate. The specific position on the plates has been optimized by NHGRI to reduce any possible errors in sample identity during the genotyping process. The positions of the 5 duplicated samples and 1 buffer control are indicated by gray shading.Subsequent to submission and the establishment of cell lines in this panel, a detailed analysis of HapMap data has shown that there are previously unreported family relationships to other members of this panel, as described in Nature 437:1299-1320 (2005). (See Supplementary Table 15 and Supplementary Information on p.12 [PMID: 16255080]).
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| Iyengar SK, Adler SG, The application of the HapMap to diabetic nephropathy and other causes of chronic renal failure Seminars in nephrology27:223-36 2007 |
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| Jones TS, Yang W, Evans WE, Relling MV, Using HapMap tools in pharmacogenomic discovery: the thiopurine methyltransferase polymorphism Clinical pharmacology and therapeutics81:729-34 2007 |
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| Ma Q, Wyszynski DF, Farrell JJ, Kutlar A, Farrer LA, Baldwin CT, Steinberg MH, Fetal hemoglobin in sickle cell anemia: genetic determinants of response to hydroxyurea Pharmacogenomics J7(6):386-94 2007 |
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| Maniatis N, Collins A, Morton NE, Effects of single SNPs, haplotypes, and whole-genome LD maps on accuracy of association mapping Genetic epidemiology31:179-88 2007 |
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| Meex SJ, van Greevenbroek MM, Ayoubi TA, Vlietinck R, van Vliet-Ostaptchouk JV, Hofker MH, Vermeulen VM, Schalkwijk CG, Feskens EJ, Boer JM, Stehouwer CD, van der Kallen CJ, de Bruin TW, ATF6 polymorphisms and haplotypes are associated with impaired glucose homeostasis and type 2 diabetes in Dutch Caucasians J Clin Endocrinol Metab31:179-88 2007 |
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| Schymick JC, Scholz SW, Fung HC, Britton A, Arepalli S, Gibbs JR, Lombardo F, Matarin M, Kasperaviciute D, Hernandez DG, Crews C, Bruijn L, Rothstein J, Mora G, Restagno G, Chiò A, Singleton A, Hardy J, Traynor BJ, Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data Lancet neurology6:322-8 2007 |
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| Service S, International Collaborative Group on Isolated Populations S, Sabatti C, Freimer N, Tag SNPs chosen from HapMap perform well in several population isolates Genetic epidemiology31:189-94 2007 |
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| Sinilnikova OM, McKay JD, Tavtigian SV, Canzian F, DeSilva D, Biessy C, Monnier S, Dossus L, Boillot C, Gioia L, Hughes DJ, Jensen MK, Overvad K, Tjonneland A, Olsen A, Clavel-Chapelon F, Chajès V, Joulin V, Linseisen J, Chang-Claude J, Boeing H, Dahm S, Trichopoulou A, Trichopoulos D, Koliva M, Khaw KT, Bingham S, Allen NE, Key T, Palli D, Panico S, Berrino F, Tumino R, Vineis P, Bueno-de-Mesquita HB, Peeters PH, van Gils CH, Lund E, Pera G, Quirós JR, Dorronsoro M, Martínez García C, Tormo MJ, Ardanaz E, Hallmans G, Lenner P, Berglund G, Manjer J, Riboli E, Lenoir GM, Kaaks R, Haplotype-based analysis of common variation in the acetyl-coA carboxylase alpha gene and breast cancer risk: a case-control study nested within the European Prospective Investigation into Cancer and Nutrition Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology16:409-15 2007 |
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| Vaclavicek A, Bermejo Lorenzo, Wappenschmidt B, Meindl A, Sutter C, Schmutzler K, Kiechle M, Bugert P, Burwinkel B, Bartram R, Hemminki K, Försti A, Genetic variation in the major mitotic checkpoint genes does not affect familial breast cancer risk Breast Cancer Res Treat106(2):205-13 2007 |
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| Vormfelde SV, Sehrt D, Toliat MR, Schirmer M, Meineke I, Tzvetkov M, Nürnberg P, Brockmöller J, Genetic Variation in the Renal Sodium Transporters NKCC2, NCC, and ENaC in Relation to the Effects of Loop Diuretic Drugs Clin Pharmacol Ther82(3):300-309 2007 |
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| Stark M, Hayward N, Genome-wide loss of heterozygosity and copy number analysis in melanoma using high-density single-nucleotide polymorphism arrays Cancer research67:2632-42 2007 |
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| Stone JL, Merriman B, Cantor RM, Geschwind DH, Nelson SF, High density SNP association study of a major autism linkage region on chromosome 17 Human molecular genetics16:704-15 2007 |
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| Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavaré S, Deloukas P, Hurles ME, Dermitzakis ET, Relative impact of nucleotide and copy number variation on gene expression phenotypes Science (New York, NY)315:848-53 2007 |
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| Hanchard N, Elzein A, Trafford C, Rockett K, Pinder M, Jallow M, Harding R, Kwiatkowski D, McKenzie C, Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations BMC genetics8:52 2007 |
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| Hao K, Genome-wide selection of tag SNPs using multiple-marker correlation Bioinformatics (Oxford, England)23:3178-84 2007 |
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| The International HapMap Consortium , (Participants are arranged by institution and then alphabetically within institutions except for Principal Investigators and Project Leaders, as indicated.) , Genotyping centres: Perlegen Sciences , Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Baylor College of Medicine and ParAllele BioScience LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Beijing Genomics Institute F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Broad Institute of Harvard and Massachusetts Institute of Technology J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Chinese National Human Genome Center at Beijing D, Shen Y, Yao Z, Chinese National Human Genome Center at Shanghai Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Chinese University of Hong Kong L, Waye MM, Tsui SK, Hong Kong University of Science and Technology SK, Xue H, Wong JT, Illumina JT, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, McGill University and Génome Québec Innovation Centre MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, University of California at San Francisco and Washington University TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, University of Hong Kong M, Tsui LC, Mak W, Qiang Song Y, Tam PK, University of Tokyo and RIKEN PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Wellcome Trust Sanger Institute T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Analysis groups: Broad Institute DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Cold Spring Harbor Laboratory D, Stein LD, Krishnan L, Vernon Smith A, Tello-Ruiz MK, Thorisson GA, Johns Hopkins University School of Medicine GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, University of Michigan S, Abecasis GR, Guan W, Li Y, Munro HM, Steve Qin Z, Thomas DJ, University of Oxford DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, University of Oxford,Wellcome Trust Centre for Human Genetics P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, RIKEN BS, Tsunoda T, US National Institutes of Health T, Mullikin JC, US National Institutes of Health National Center for Biotechnology Information JC, Sherry ST, Feolo M, Skol A, Community engagement/public consultation and sample collection groups: Beijing Normal University and Beijing Genomics Institute A, Zhang H, Zeng C, Zhao H, Health Sciences University of Hokkaido, Eubios Ethics Institute, and Shinshu University H, Matsuda I, Fukushima Y, Macer DR, Suda E, Howard University and University of Ibadan E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, University of Utah CD, Leppert MF, Dixon M, Peiffer A, Ethical, legal and social issues: Chinese Academy of Social Sciences A, Qiu R, Genetic Interest Group R, Kent A, Kyoto University A, Kato K, Nagasaki University K, Niikawa N, University of Ibadan School of Medicine N, Adewole IF, University of Montréal IF, Knoppers BM, University of Oklahoma BM, Foster MW, Vanderbilt University MW, Wright Clayton E, Wellcome Trust E, Watkin J, SNP discovery: Baylor College of Medicine J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Broad Institute of Harvard and Massachusetts Institute of Technology I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Washington University D, Wilson RK, Fulton LL, Wellcome Trust Sanger Institute LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Scientific management: Chinese Academy of Sciences DL, Chen Z, Han H, Kang L, Genome Canada L, Godbout M, Wallenburg JC, Génome Québec JC, L'archevêque P, Bellemare G, Japanese Ministry of Education, Culture, Sports, Science and Technology G, Saeki K, Ministry of Science and Technology of the People’s Republic of China K, Wang H, An D, Fu H, Li Q, Wang Z, The Human Genetic Resource Administration of China Z, Wang R, The SNP Consortium R, Holden AL, US National Institutes of Health AL, Brooks LD, McEwen JE, Guyer MS, Ota Wang V, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Wellcome Trust FS, Kennedy K, Jamieson R, Stewart J, A second generation human haplotype map of over 31 million SNPs Nature449:851-861 2007 |
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| Eberle MA, Ng PC, Kuhn K, Zhou L, Peiffer DA, Galver L, Viaud-Martinez KA, Lawley CT, Gunderson KL, Shen R, Murray SS, Power to detect risk alleles using genome-wide tag SNP panels PLoS genetics3:1827-37 2007 |
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| Enomoto H, Noguchi E, Iijima S, Takahashi T, Hayakawa K, Ito M, Kano T, Aoki T, Suzuki Y, Koga M, Tamari M, Shiohara T, Otsuka F, Arinami T, Single nucleotide polymorphism-based genome-wide linkage analysis in Japanese atopic dermatitis families BMC dermatology7:5 2007 |
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| Estivill X, Armengol L, Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies PLoS genetics3:1787-99 2007 |
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| Florez JC, Manning AK, Dupuis J, McAteer J, Irenze K, Gianniny L, Mirel DB, Fox CS, Cupples LA, Meigs JB, A 100K genome-wide association scan for diabetes and related traits in the Framingham Heart Study: replication and integration with other genome-wide datasets Diabetes56:3063-74 2007 |
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| Rousseau K, Byrne C, Griesinger G, Leung A, Chung A, Hill AS, Swallow DM, Allelic Association and Recombination Hotspots in the Mucin Gene (MUC) Complex on Chromosome 11p155 Ann Hum Genet71:561-569 2007 |
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| Scott LJ, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, Duren WL, Erdos MR, Stringham HM, Chines PS, Jackson AU, Prokunina-Olsson L, Ding CJ, Swift AJ, Narisu N, Hu T, Pruim R, Xiao R, Li XY, Conneely KN, Riebow NL, Sprau AG, Tong M, White PP, Hetrick KN, Barnhart MW, Bark CW, Goldstein JL, Watkins L, Xiang F, Saramies J, Buchanan TA, Watanabe RM, Valle TT, Kinnunen L, Abecasis GR, Pugh EW, Doheny KF, Bergman RN, Tuomilehto J, Collins FS, Boehnke M, A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants Science316:1341-5 2007 |
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| Scuteri A, Sanna S, Chen WM, Uda M, Albai G, Strait J, Najjar S, Nagaraja R, Orrú M, Usala G, Dei M, Lai S, Maschio A, Busonero F, Mulas A, Ehret GB, Fink AA, Weder AB, Cooper RS, Galan P, Chakravarti A, Schlessinger D, Cao A, Lakatta E, Abecasis GR, Genome-Wide Association Scan Shows Genetic Variants in the FTO Gene Are Associated with Obesity-Related Traits PLoS Genet3:e115 2007 |
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| Shi M, Umbach DM, Weinberg CR, Identification of risk-related haplotypes with the use of multiple SNPs from nuclear families American journal of human genetics81:53-66 2007 |
| PubMed ID: 17564963 |
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| Stacey SN, Manolescu A, Sulem P, Rafnar T, Gudmundsson J, Gudjonsson SA, Masson G, Jakobsdottir M, Thorlacius S, Helgason A, Aben KK, Strobbe LJ, Albers-Akkers MT, Swinkels DW, Henderson BE, Kolonel LN, Le Marchand L, Millastre E, Andres R, Godino J, Garcia-Prats MD, Polo E, Tres A, Mouy M, Saemundsdottir J, Backman VM, Gudmundsson L, Kristjansson K, Bergthorsson JT, Kostic J, Frigge ML, Geller F, Gudbjartsson D, Sigurdsson H, Jonsdottir T, Hrafnkelsson J, Johannsson J, Sveinsson T, Myrdal G, Grimsson HN, Jonsson T, von Holst S, Werelius B, Margolin S, Lindblom A, Mayordomo JI, Haiman CA, Kiemeney LA, Johannsson OT, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer Nature genetics39:865-9 2007 |
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| Steinthorsdottir V, Thorleifsson G, Reynisdottir I, Benediktsson R, Jonsdottir T, Walters GB, Styrkarsdottir U, Gretarsdottir S, Emilsson V, Ghosh S, Baker A, Snorradottir S, Bjarnason H, Ng MC, Hansen T, Bagger Y, Wilensky RL, Reilly MP, Adeyemo A, Chen Y, Zhou J, Gudnason V, Chen G, Huang H, Lashley K, Doumatey A, So WY, Ma RC, Andersen G, Borch-Johnsen K, Jorgensen T, van Vliet-Ostaptchouk JV, Hofker MH, Wijmenga C, Christiansen C, Rader DJ, Rotimi C, Gurney M, Chan JC, Pedersen O, Sigurdsson G, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, A variant in CDKAL1 influences insulin response and risk of type 2 diabetes Nature genetics39:770-5 2007 |
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| Sun S, Greenwood CM, Neal RM, Haplotype inference using a Bayesian Hidden Markov model Genet Epidemiol31(8):937-948 2007 |
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| Todd JA, Walker NM, Cooper JD, Smyth DJ, Downes K, Plagnol V, Bailey R, Nejentsev S, Field SF, Payne F, Lowe CE, Szeszko JS, Hafler JP, Zeitels L, Yang JH, Vella A, Nutland S, Stevens HE, Schuilenburg H, Coleman G, Maisuria M, Meadows W, Smink LJ, Healy B, Burren OS, Lam AA, Ovington NR, Allen J, Adlem E, Leung HT, Wallace C, Howson JM, Guja C, Ionescu-Tîrgoviste C, Genetics of Type 1 Diabetes in Finland C, Simmonds MJ, Heward JM, Gough SC, Wellcome Trust Case Control Consortium SC, Dunger DB, Wicker LS, Clayton DG, Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes Nature genetics39:857-64 2007 |
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| Tomlinson I, Webb E, Carvajal-Carmona L, Broderick P, Kemp Z, Spain S, Penegar S, Chandler I, Gorman M, Wood W, Barclay E, Lubbe S, Martin L, Sellick G, Jaeger E, Hubner R, Wild R, Rowan A, Fielding S, Howarth K, the CORGI Consortium K, Silver A, Atkin W, Muir K, Logan R, Kerr D, Johnstone E, Sieber O, Gray R, Thomas H, Peto J, Cazier JB, Houlston R, A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q2421 Nature Genetics39:984-988 2007 |
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| van Heel DA, Franke L, Hunt KA, Gwilliam R, Zhernakova A, Inouye M, Wapenaar MC, Barnardo MC, Bethel G, Holmes GK, Feighery C, Jewell D, Kelleher D, Kumar P, Travis S, Walters JR, Sanders DS, Howdle P, Swift J, Playford RJ, McLaren WM, Mearin ML, Mulder CJ, McManus R, McGinnis R, Cardon LR, Deloukas P, Wijmenga C, A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21 Nature genetics39:827-9 2007 |
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| Van Limbergen J, Nimmo ER, Russell RK, Drummond HE, Smith L, Anderson NH, Davies G, Arnott ID, Wilson DC, Satsangi J, Investigation of NOD1/CARD4 variation in Inflammatory Bowel Disease using a haplotype-tagging strategy Human Molecular Genetics16(18):2175-86 2007 |
| PubMed ID: 17613538 |
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| Wellcome Trust Case Control Consortium, Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls Nature447:661-78 2007 |
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| Xiao Y, Segal MR, Yang YH, Yeh RF, A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays Bioinformatics (Oxford, England)23:1459-67 2007 |
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| Xu Z, Kaplan NL, Taylor JA, Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data European Journal of Human Genetics15(10):1063-70 2007 |
| PubMed ID: 17568388 |
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| Yamazaki K, Onouchi Y, Takazoe M, Kubo M, Nakamura Y, Hata A, Association analysis of genetic variants in IL23R, ATG16L1 and 5p131 loci with Crohn's disease in Japanese patients Journal of human genetics52:575-83 2007 |
| PubMed ID: 17534574 |
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| Zanke BW, Greenwood CM, Rangrej J, Kustra R, Tenesa A, Farrington SM, Prendergast J, Olschwang S, Chiang T, Crowdy E, Ferretti V, Laflamme P, Sundararajan S, Roumy S, Olivier JF, Robidoux F, Sladek R, Montpetit A, Campbell P, Bezieau S, O'shea AM, Zogopoulos G, Cotterchio M, Newcomb P, McLaughlin J, Younghusband B, Green R, Green J, Porteous ME, Campbell H, Blanche H, Sahbatou M, Tubacher E, Bonaiti-Pellié C, Buecher B, Riboli E, Kury S, Chanock SJ, Potter J, Thomas G, Gallinger S, Hudson TJ, Dunlop MG, Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24 Nature Genetics39:989-994 2007 |
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| Zeggini E, Weedon MN, Lindgren CM, Frayling TM, Elliott KS, Lango H, Timpson NJ, Perry JR, Rayner NW, Freathy RM, Barrett JC, Shields B, Morris AP, Ellard S, Groves CJ, Harries LW, Marchini JL, Owen KR, Knight B, Cardon LR, Walker M, Hitman GA, Morris AD, Doney AS, Wellcome Trust Case Control Consortium (WTCCC) AS, Burton PR, Clayton DG, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, Ouwehand WH, Samani NJ, Todd JA, Donnelly P, Davison D, Easton D, Evans D, Leung HT, Spencer CC, Tobin MD, Attwood AP, Boorman JP, Cant B, Everson U, Hussey JM, Jolley JD, Knight AS, Koch K, Meech E, Nutland S, Prowse CV, Stevens HE, Taylor NC, Walters GR, Walker NM, Watkins NA, Winzer T, Jones RW, McArdle WL, Ring SM, Strachan DP, Pembrey M, Breen G, St Clair D, Caesar S, Gordon-Smith K, Jones L, Fraser C, Green EK, Grozeva D, Hamshere ML, Holmans PA, Jones IR, Kirov G, Moskvina V, Nikolov I, O'donovan MC, Owen MJ, Collier DA, Elkin A, Farmer A, Williamson R, McGuffin P, Young AH, Ferrier IN, Ball SG, Balmforth AJ, Barrett JH, Bishop DT, Iles MM, Maqbool A, Yuldasheva N, Hall AS, Braund PS, Dixon RJ, Mangino M, Stevens S, Thompson JR, Bredin F, Tremelling M, Parkes M, Drummond H, Lees CW, Nimmo ER, Satsangi J, Fisher SA, Forbes A, Lewis CM, Onnie CM, Prescott NJ, Sanderson J, Mathew CG, Barbour J, Mohiuddin MK, Todhunter CE, Mansfield JC, Ahmad T, Cummings FR, Jewell DP, Webster J, Brown MJ, Lathrop GM, Connell J, Dominiczak A, Braga Marcano CA, Burke B, Dobson R, Gungadoo J, Lee KL, Munroe PB, Newhouse SJ, Onipinla A, Wallace C, Xue M, Caulfield M, Farrall M, Barton A, Bruce IN, Donovan H, Eyre S, Gilbert PD, Hider SL, Hinks AM, John SL, Potter C, Silman AJ, Symmons DP, Thomson W, Worthington J, Dunger DB, Widmer B, Newport M, Sirugo G, Lyons E, Vannberg F, Hill AV, Bradbury LA, Farrar C, Pointon JJ, Wordsworth P, Brown MA, Franklyn JA, Heward JM, Simmonds MJ, Gough SC, Seal S, Stratton MR, Rahman N, Ban M, Goris A, Sawcer SJ, Compston A, Conway D, Jallow M, Rockett KA, Bumpstead SJ, Chaney A, Downes K, Ghori MJ, Gwilliam R, Hunt SE, Inouye M, Keniry A, King E, McGinnis R, Potter S, Ravindrarajah R, Whittaker P, Widden C, Withers D, Cardin NJ, Ferreira T, Pereira-Gale J, Hallgrimsdóttir IB, Howie BN, Su Z, Teo YY, Vukcevic D, Bentley D, Compston A, Ouwehand NJ, Samani MR, Isaacs JD, Morgan AW, Wilson GD, Ardern-Jones A, Berg J, Brady A, Bradshaw N, Brewer C, Brice G, Bullman B, Campbell J, Castle B, Cetnarsryj R, Chapman C, Chu C, Coates N, Cole T, Davidson R, Donaldson A, Dorkins H, Douglas F, Eccles D, Eeles R, Elmslie F, Evans DG, Goff S, Goodman S, Goudie D, Gray J, Greenhalgh L, Gregory H, Hodgson SV, Homfray T, Houlston RS, Izatt L, Jackson L, Jeffers L, Johnson-Roffey V, Kavalier F, Kirk C, Lalloo F, Langman C, Locke I, Longmuir M, Mackay J, Magee A, Mansour S, Miedzybrodzka Z, Miller J, Morrison P, Murday V, Paterson J, Pichert G, Porteous M, Rahman N, Rogers M, Rowe S, Shanley S, Saggar A, Scott G, Side L, Snadden L, Steel M, Thomas M, Thomas S, McCarthy MI, Hattersley AT, Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes Science316:1336-41 2007 |
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| Zhao ZZ, Nyholt DR, Le L, Thomas S, Engwerda C, Randall L, Treloar SA, Montgomery GW, Genetic variation in tumour necrosis factor and lymphotoxin is not associated with endometriosis in an Australian sample Human reproduction (Oxford, England)22:2389-97 2007 |
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| Cole W, Naj C, O'Connell R, Stine C, Sorkin D, Wozniak A, Stern J, Yepes M, Lawrence A, Reinhart J, Strickland K, Mitchell D, Kittner J, Neuroserpin polymorphisms and stroke risk in a biracial population: the stroke prevention in young women study BMC Neurol7(1):37 2007 |
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| Cooper D, Smyth J, Bailey R, Payne F, Downes K, Godfrey M, Masters J, Zeitels R, Vella A, Walker M, Todd A, The candidate genes TAF5L, TCF7, PDCD1, IL6 and ICAM1 cannot be excluded from having effects in type 1 diabetes BMC Med Genet8(1):71 2007 |
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| Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, The International HapMap Consortium ES, Genotyping centres: Perlegen Sciences ES, Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Baylor College of Medicine and ParAllele BioScience LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Beijing Genomics Institute F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Broad Institute of Harvard and Massachusetts Institute of Technology J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Chinese National Human Genome Center at Beijing D, Shen Y, Yao Z, Chinese National Human Genome Center at Shanghai Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Chinese University of Hong Kong L, Waye MM, Tsui SK, Hong Kong University of Science and Technology SK, Xue H, Tze-Fei Wong J, Illumina J, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, McGill University and Génome Québec Innovation Centre MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, University of California at San Francisco and Washington University TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, University of Hong Kong M, Tsui LC, Mak W, Qiang Song Y, Tam PK, University of Tokyo and RIKEN PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Wellcome Trust Sanger Institute T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Analysis groups: Broad Institute DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Cold Spring Harbor Laboratory D, Stein LD, Krishnan L, Vernon Smith A, Tello-Ruiz MK, Thorisson GA, Johns Hopkins University School of Medicine GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, University of Michigan S, Abecasis GR, Guan W, Li Y, Munro HM, Qin ZS, Thomas DJ, University of Oxford DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, University of Oxford, Wellcome Trust Centre for Human Genetics P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, RIKEN BS, Tsunoda T, Johnson TA, US National Institutes of Health TA, Mullikin JC, US National Institutes of Health National Center for Biotechnology Information JC, Sherry ST, Feolo M, Skol A, Community engagement/public consultation and sample collection groups: Beijing Normal University and Beijing Genomics Institute A, Zhang H, Zeng C, Zhao H, Health Sciences University of Hokkaido, Eubios Ethics Institute and Shinshu University H, Matsuda I, Fukushima Y, Macer DR, Suda E, Howard University and University of Ibadan E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, University of Utah CD, Leppert MF, Dixon M, Peiffer A, Ethical, legal and social issues: Chinese Academy of Social Sciences A, Qiu R, Genetic Interest Group R, Kent A, Kyoto University A, Kato K, Nagasaki University K, Niikawa N, University of Ibadan School of Medicine N, Adewole IF, University of Montréal IF, Knoppers BM, University of Oklahoma BM, Foster MW, Vanderbilt University MW, Clayton EW, Wellcome Trust EW, Watkin J, SNP discovery: Baylor College of Medicine J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Broad Institute of Harvard and Massachusetts Institute of Technology I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Washington University D, Wilson RK, Fulton LL, Wellcome Trust Sanger Institute LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Scientific management: Chinese Academy of Sciences DL, Chen Z, Han H, Kang L, Genome Canada L, Godbout M, Wallenburg JC, Génome Québec JC, L'archevêque P, Bellemare G, Japanese Ministry of Education, Culture, Sports, Science and Technology G, Saeki K, Ministry of Science and Technology of the People’s Republic of China K, Wang H, An D, Fu H, Li Q, Wang Z, The Human Genetic Resource Administration of China Z, Wang R, The SNP Consortium R, Holden AL, US National Institutes of Health AL, Brooks LD, McEwen JE, Guyer MS, Ota Wang V, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Wellcome Trust FS, Kennedy K, Jamieson R, Stewart J, Genome-wide detection and characterization of positive selection in human populations 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| Broderick P, Carvajal-Carmona L, Pittman AM, Webb E, Howarth K, Rowan A, Lubbe S, Spain S, Sullivan K, Fielding S, Jaeger E, Vijayakrishnan J, Kemp Z, Gorman M, Chandler I, Papaemmanuil E, Penegar S, Wood W, Sellick G, Qureshi M, Teixeira A, Domingo E, Barclay E, Martin L, Sieber O, CORGI Consortium O, Kerr D, Gray R, Peto J, Cazier JB, Tomlinson I, Houlston RS, A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk Nature genetics39:1315-7 2007 |
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| Chen WM, Abecasis GR, Family-based association tests for genomewide association scans American journal of human genetics81:913-26 2007 |
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| Christoforou A, Le Hellard S, Thomson PA, Morris SW, Tenesa A, Pickard BS, Wray NR, Muir WJ, Blackwood DH, Porteous DJ, Evans KL, Association analysis of the chromosome 4p15-p16 candidate region for bipolar disorder and schizophrenia Molecular psychiatry12:1011-25 2007 |
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| Crespi B, Summers K, Dorus S, Adaptive evolution of genes underlying schizophrenia Proceedings Biological sciences / The Royal Society274:2801-10 2007 |
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| Askew DJ, Cataltepe S, Kumar V, Edwards C, Pace SM, Howarth RN, Pak SC, Askew YS, Brömme D, Luke CJ, Whisstock JC, Silverman GA, SERPINB11 Is a New Noninhibitory Intracellular Serpin: COMMON SINGLE NUCLEOTIDE POLYMORPHISMS IN THE SCAFFOLD IMPAIR CONFORMATIONAL CHANGE The Journal of biological chemistry282:24948-60 2007 |
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| Gudbjartsson DF, Arnar DO, Helgadottir A, Gretarsdottir S, Holm H, Sigurdsson A, Jonasdottir A, Baker A, Thorleifsson G, Kristjansson K, Palsson A, Blondal T, Sulem P, Backman VM, Hardarson GA, Palsdottir E, Helgason A, Sigurjonsdottir R, Sverrisson JT, Kostulas K, Ng MC, Baum L, So WY, Wong KS, Chan JC, Furie KL, Greenberg SM, Sale M, Kelly P, MacRae CA, Smith EE, Rosand J, Hillert J, Ma RC, Ellinor PT, Thorgeirsson G, Gulcher JR, Kong A, Thorsteinsdottir U, Stefansson K, Variants conferring risk of atrial fibrillation on chromosome 4q25 Nature448:353-7 2007 |
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| Gudmundsson J, Sulem P, Steinthorsdottir V, Bergthorsson JT, Thorleifsson G, Manolescu A, Rafnar T, Gudbjartsson D, Agnarsson BA, Baker A, Sigurdsson A, Benediktsdottir KR, Jakobsdottir M, Blondal T, Stacey SN, Helgason A, Gunnarsdottir S, Olafsdottir A, Kristinsson KT, Birgisdottir B, Ghosh S, Thorlacius S, Magnusdottir D, Stefansdottir G, Kristjansson K, Bagger Y, Wilensky RL, Reilly MP, Morris AD, Kimber CH, Adeyemo A, Chen Y, Zhou J, So WY, Tong PC, Ng MC, Hansen T, Andersen G, Borch-Johnsen K, Jorgensen T, Tres A, Fuertes F, Ruiz-Echarri M, Asin L, Saez B, van Boven E, Klaver S, Swinkels DW, Aben KK, Graif T, Cashy J, Suarez BK, van Vierssen Trip O, Frigge ML, Ober C, Hofker MH, Wijmenga C, Christiansen C, Rader DJ, Palmer CN, Rotimi C, Chan JC, Pedersen O, Sigurdsson G, Benediktsson R, Jonsson E, Einarsson GV, Mayordomo JI, Catalona WJ, Kiemeney LA, Barkardottir RB, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes Nature genetics39:977-83 2007 |
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| Hakonarson H, Grant SF, Bradfield JP, Marchand L, Kim CE, Glessner JT, Grabs R, Casalunovo T, Taback SP, Frackelton EC, Lawson ML, Robinson LJ, Skraban R, Lu Y, Chiavacci RM, Stanley CA, Kirsch SE, Rappaport EF, Orange JS, Monos DS, Devoto M, Qu HQ, Polychronakos C, A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene Nature448:591-4 2007 |
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| Hamvas A, Wegner DJ, Carlson CS, Bergmann KR, Trusgnich MA, Fulton L, Kasai Y, An P, Mardis ER, Wilson RK, Cole FS, Comprehensive genetic variant discovery in the surfactant protein B gene Pediatric research62:170-5 2007 |
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| Helgadottir A, Thorleifsson G, Manolescu A, Gretarsdottir S, Blondal T, Jonasdottir A, Jonasdottir A, Sigurdsson A, Baker A, Palsson A, Masson G, Gudbjartsson DF, Magnusson KP, Andersen K, Levey AI, Backman VM, Matthiasdottir S, Jonsdottir T, Palsson S, Einarsdottir H, Gunnarsdottir S, Gylfason A, Vaccarino V, Hooper WC, Reilly MP, Granger CB, Austin H, Rader DJ, Shah SH, Quyyumi AA, Gulcher JR, Thorgeirsson G, Thorsteinsdottir U, Kong A, Stefansson K, A common variant on chromosome 9p21 affects the risk of myocardial infarction Science316:1491-3 2007 |
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| Huang BE, Amos CI, Lin DY, Detecting haplotype effects in genomewide association studies Genet Epidemiol31(8):803-812 2007 |
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| Buch S, Schafmayer C, Völzke H, Becker C, Franke A, von Eller-Eberstein H, Kluck C, Bässmann I, Brosch M, Lammert F, Miquel JF, Nervi F, Wittig M, Rosskopf D, Timm B, Höll C, Seeger M, Elsharawy A, Lu T, Egberts J, Fändrich F, Fölsch UR, Krawczak M, Schreiber S, Nürnberg P, Tepel J, Hampe J, A genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease Nature Genetics39:995-999 2007 |
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| Chen H, Green RE, Paabo S, Slatkin M, The Allele-Frequency Spectrum Conditioned on Information from a Closely-Related Species Genetics177(1):387-98 2007 |
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| Cheng C Y, Tang L S, Yeung HY, Miller N, Genetic Association of Complex Traits: Using Idiopathic Scoliosis as an Example Clin Orthop Relat Res462:38-44 2007 |
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| Delaneau O, Coulonges C, Boelle PY, Nelson G, Spadoni JL, Zagury JF, ISHAPE: new rapid and accurate software for haplotyping BMC bioinformatics8:205 2007 |
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| Diabetes Genetics Initiative of Broad Institute of Harvard and MIT, Lund University, and Novartis Institutes of BioMedical Research , Saxena R, Voight BF, Lyssenko V, Burtt NP, de Bakker PI, Chen H, Roix JJ, Kathiresan S, Hirschhorn JN, Daly MJ, Hughes TE, Groop L, Altshuler D, Almgren P, Florez JC, Meyer J, Ardlie K, Bengtsson Boström K, Isomaa B, Lettre G, Lindblad U, Lyon HN, Melander O, Newton-Cheh C, Nilsson P, Orho-Melander M, Råstam L, Speliotes EK, Taskinen MR, Tuomi T, Guiducci C, Berglund A, Carlson J, Gianniny L, Hackett R, Hall L, Holmkvist J, Laurila E, Sjögren M, Sterner M, Surti A, Svensson M, Svensson M, Tewhey R, Blumenstiel B, Parkin M, Defelice M, Barry R, Brodeur W, Camarata J, Chia N, Fava M, Gibbons J, Handsaker B, Healy C, Nguyen K, Gates C, Sougnez C, Gage D, Nizzari M, Gabriel SB, Chirn GW, Ma Q, Parikh H, Richardson D, Ricke D, Purcell S, Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels Science316:1331-6 2007 |
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| Douglas JA, Levin AM, Zuhlke KA, Ray AM, Johnson GR, Lange EM, Wood DP, Cooney KA, Common variation in the BRCA1 gene and prostate cancer risk Cancer epidemiology, biomarkers & prevention16:1510-6 2007 |
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| Easton DF, Pooley KA, Dunning AM, Pharoah PD, Thompson D, Ballinger DG, Struewing JP, Morrison J, Field H, Luben R, Wareham N, Ahmed S, Healey CS, Bowman R, SEARCH collaborators R, Meyer KB, Haiman CA, Kolonel LK, Henderson BE, Le Marchand L, Brennan P, Sangrajrang S, Gaborieau V, Odefrey F, Shen CY, Wu PE, Wang HC, Eccles D, Evans DG, Peto J, Fletcher O, Johnson N, Seal S, Stratton MR, Rahman N, Chenevix-Trench G, Bojesen SE, Nordestgaard BG, Axelsson CK, Garcia-Closas M, Brinton L, Chanock S, Lissowska J, Peplonska B, Nevanlinna H, Fagerholm R, Eerola H, Kang D, Yoo KY, Noh DY, Ahn SH, Hunter DJ, Hankinson SE, Cox DG, Hall P, Wedren S, Liu J, Low YL, Bogdanova N, Schürmann P, Dörk T, Tollenaar RA, Jacobi CE, Devilee P, Klijn JG, Sigurdson AJ, Doody MM, Alexander BH, Zhang J, Cox A, Brock IW, MacPherson G, Reed MW, Couch FJ, Goode EL, Olson JE, Meijers-Heijboer H, van den Ouweland A, Uitterlinden A, Rivadeneira F, Milne RL, Ribas G, Gonzalez-Neira A, Benitez J, Hopper JL, McCredie M, Southey M, Giles GG, Schroen C, Justenhoven C, Brauch H, Hamann U, Ko YD, Spurdle AB, Beesley J, Chen X, kConFab X, AOCS Management Group X, Mannermaa A, Kosma VM, Kataja V, Hartikainen J, Day NE, Cox DR, Ponder BA, Genome-wide association study identifies novel breast cancer susceptibility loci Nature447:1087-93 2007 |
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| Feigelson HS, Rodriguez C, Welch R, Hutchinson A, Shao W, Jacobs K, Diver WR, Calle EE, Thun MJ, Hunter DJ, Thomas G, Chanock SJ, Successful genome-wide scan in paired blood and buccal samples Cancer epidemiology, biomarkers & prevention16:1023-5 2007 |
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| Freudenberg J, Fu YH, Ptá Cbreve Ek LJ, Enrichment of HapMap recombination hotspot predictions around human nervous system genes: evidence for positive selection ? Eur J Hum Genet15(10):1071-8 2007 |
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| Freudenberg J, Fu YH, Ptácek LJ, Human recombination rates are increased around accelerated conserved regions--evidence for continued selection? Bioinformatics (Oxford, England)23:1441-3 2007 |
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| Hunter DJ, Kraft P, Jacobs KB, Cox DG, Yeager M, Hankinson SE, Wacholder S, Wang Z, Welch R, Hutchinson A, Wang J, Yu K, Chatterjee N, Orr N, Willett WC, Colditz GA, Ziegler RG, Berg CD, Buys SS, McCarty CA, Feigelson HS, Calle EE, Thun MJ, Hayes RB, Tucker M, Gerhard DS, Fraumeni JF, Hoover RN, Thomas G, Chanock SJ, A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer Nature genetics39:870-4 2007 |
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| Johansson A, Vavruch-Nilsson V, Cox DR, Frazer KA, Gyllensten U, Evaluation of the SNP tagging approach in an independent population sample-array-based SNP discovery in Sami Human genetics122:141-50 2007 |
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| King TM, Au KS, Kirkpatrick TJ, Davidson C, Fletcher JM, Townsend I, Tyerman GH, Shimmin LC, Northrup H, The Impact of BRCA1 on Spina Bifida Meningomyelocele Lesions Ann Hum Genet71(Pt6):719-28 2007 |
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| Klitø NG, Tan Q, Nyegaard M, Brusgaard K, Thomassen M, Skouboe C, Dahlgaard J, Kruse TA, Arrayed primer extension in the "array of arrays" format: a rational approach for microarray-based SNP genotyping Genetic testing11:160-6 2007 |
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| Kullo IJ, Ding K, Patterns of population differentiation of candidate genes for cardiovascular disease BMC genetics8:48 2007 |
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| Leak TS, Keene KL, Langefeld CD, Gallagher CJ, Mychaleckyj JC, Freedman BI, Bowden DW, Rich SS, Sale MM, Association of the proprotein convertase subtilisin/kexin-type 2 (PCSK2) gene with type 2 diabetes in an African American population Mol Genet Metab92(1-2):145-50 2007 |
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| Lie BA, Viken MK, Akselsen HE, Flåm ST, Pociot F, Nerup J, Kockum I, Cambon-Thomsen A, Thorsby E, Undlien DE, Association analysis in type 1 diabetes of the PRSS16 gene encoding a thymus-specific serine protease Human immunology68:592-8 2007 |
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| Mägi R, Pfeufer A, Nelis M, Montpetit A, Metspalu A, Remm M, Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation BMC genomics8:159 2007 |
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| Marchini J, Howie B, Myers S, McVean G, Donnelly P, A new multipoint method for genome-wide association studies by imputation of genotypes Nature genetics39:906-13 2007 |
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| Marvelle F, Lange A, Qin L, Wang Y, Lange M, Adair S, Mohlke L, Comparison of ENCODE region SNPs between Cebu Filipino and Asian HapMap samples Journal of Human Genetics52(9):729-37 2007 |
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| Matarín M, Brown WM, Scholz S, Simón-Sánchez J, Fung HC, Hernandez D, Gibbs JR, De Vrieze FW, Crews C, Britton A, Langefeld CD, Brott TG, Brown RD, Worrall BB, Frankel M, Silliman S, Case LD, Singleton A, Hardy JA, Rich SS, Meschia JF, A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release Lancet neurology6:414-20 2007 |
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| McPherson R, Pertsemlidis A, Kavaslar N, Stewart A, Roberts R, Cox DR, Hinds DA, Pennacchio LA, Tybjaerg-Hansen A, Folsom AR, Boerwinkle E, Hobbs HH, Cohen JC, A common allele on chromosome 9 associated with coronary heart disease Science316:1488-91 2007 |
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| Moffatt MF, Kabesch M, Liang L, Dixon AL, Strachan D, Heath S, Depner M, von Berg A, Bufe A, Rietschel E, Heinzmann A, Simma B, Frischer T, Willis-Owen SA, Wong KC, Illig T, Vogelberg C, Weiland SK, von Mutius E, Abecasis GR, Farrall M, Gut IG, Lathrop GM, Cookson WO, Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma Nature448:470-3 2007 |
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| Ohnishi T, Yamada K, Ohba H, Iwayama Y, Toyota T, Hattori E, Inada T, Kunugi H, Tatsumi M, Ozaki N, Iwata N, Sakamoto K, Iijima Y, Iwata Y, Tsuchiya KJ, Sugihara G, Nanko S, Osumi N, Detera-Wadleigh SD, Kato T, Yoshikawa T, A promoter haplotype of the inositol monophosphatase 2 gene (IMPA2) at 18p112 confers a possible risk for bipolar disorder by enhancing transcription Neuropsychopharmacology32:1727-37 2007 |
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| Pal P, Xi H, Sun G, Kaushal R, Meeks J, Thaxton Shad, Guha S, Jin H, Suarez K, Catalona J, Deka R, Tagging SNPs in the kallikrein genes 3 and 2 on 19q13 and their associations with prostate cancer in men of European origin Human Genetics122(3-4):251-9 2007 |
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| Pickrell J, Clerget-Darpoux F, Bourgain C, Power of genome-wide association studies in the presence of interacting loci Genet Epidemiol31(7):48-62 2007 |
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| Post W, Shen H, Damcott C, Arking DE, Kao WH, Sack PA, Ryan KA, Chakravarti A, Mitchell BD, Shuldiner AR, Associations between genetic variants in the NOS1AP (CAPON) gene and cardiac repolarization in the old order Amish Human heredity64:214-9 2007 |
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| Rezende VB, Barbosa F, Montenegro MF, Sandrim VC, Gerlach RF, Tanus-Santos JE, An interethnic comparison of the distribution of vitamin D receptor genotypes and haplotypes Clinica chimica acta384:155-9 2007 |
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| Shi J, Hattori E, Zou H, Badner JA, Christian SL, Gershon ES, Liu C, No evidence for association between 19 cholinergic genes and bipolar disorder American journal of medical genetics Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics144:715-23 2007 |
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| Zhernakova A, Alizadeh BZ, Bevova M, van Leeuwen MA, Coenen MJ, Franke B, Franke L, Posthumus MD, van Heel DA, van der Steege G, Radstake TR, Barrera P, Roep BO, Koeleman BP, Wijmenga C, Novel association in chromosome 4q27 region with rheumatoid arthritis and confirmation of type 1 diabetes point to a general risk locus for autoimmune diseases American journal of human genetics81:1284-8 2007 |
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| Zhu X, Cooper RS, Admixture Mapping Provides Evidence of Association of the VNN1 Gene with Hypertension PLoS ONE2:e1244 2007 |
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| van Es MA, Van Vught PW, Blauw HM, Franke L, Saris CG, Andersen PM, Van Den Bosch L, de Jong SW, van 't Slot R, Birve A, Lemmens R, de Jong V, Baas F, Schelhaas HJ, Sleegers K, Van Broeckhoven C, Wokke JH, Wijmenga C, Robberecht W, Veldink JH, Ophoff RA, van den Berg LH, ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study Lancet neurology6:869-77 2007 |
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| Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET, Population genomics of human gene expression Nature genetics39:1217-24 2007 |
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| Xu Y, Xue Y, Asan Y, Daly A, Wu L, Tyler-Smith C, Variation of the oxytocin/neurophysin I (OXT) gene in four human populations Journal of human genetics53:637-43 2007 |
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| Bossé Y, Hudson TJ, Toward a Comprehensive Set of Asthma Susceptibility Genes Annu Rev Med58:43-56 2007 |
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| Duerr RH, Taylor KD, Brant SR, Rioux JD, Silverberg MS, Daly MJ, Steinhart AH, Abraham C, Regueiro M, Griffiths A, Dassopoulos T, Bitton A, Yang H, Targan S, Datta LW, Kistner EO, Schumm LP, Lee AT, Gregersen PK, Barmada MM, Rotter JI, Nicolae DL, Cho JH, A genome-wide association study identifies IL23R as an inflammatory bowel disease gene Science314:1461-3 2006 |
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| Fearnhead P, SequenceLDhot: detecting recombination hotspots Bioinformatics (Oxford, England)22:3061-6 2006 |
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| Forton JT, Kwiatkowski DP, Searching for the regulators of human gene expression BioEssays : news and reviews in molecular, cellular and developmental biology28:968-72 2006 |
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| Gibbs JR, Singleton A, Application of genome-wide single nucleotide polymorphism typing: simple association and beyond PLoS genetics2:e150 2006 |
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| Grassi MA, Fingert JH, Scheetz TE, Roos BR, Ritch R, West SK, Kawase K, Shire AM, Mullins RF, Stone EM, Ethnic variation in AMD-associated complement factor H polymorphism pTyr402His Human mutation27:921-5 2006 |
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| Groves CJ, Zeggini E, Minton J, Frayling TM, Weedon MN, Rayner NW, Hitman GA, Walker M, Wiltshire S, Hattersley AT, McCarthy MI, Association analysis of 6,736 UK subjects provides replication and confirms TCF7L2 as a type 2 diabetes susceptibility gene with a substantial effect on individual risk Diabetes55:2640-4 2006 |
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| Grunau C, Buard J, Brun ME, De Sario A, Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21 Genome research16:1198-207 2006 |
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| He J, Zelikovsky A, MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression Bioinformatics (Oxford, England)22:2558-61 2006 |
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| Healy DG, Case-control studies in the genomic era: a clinician's guide Lancet neurology5:701-7 2006 |
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| de Bakker PI, Burtt NP, Graham RR, Guiducci C, Yelensky R, Drake JA, Bersaglieri T, Penney KL, Butler J, Young S, Onofrio RC, Lyon HN, Stram DO, Haiman CA, Freedman ML, Zhu X, Cooper R, Groop L, Kolonel LN, Henderson BE, Daly MJ, Hirschhorn JN, Altshuler D, Transferability of tag SNPs in genetic association studies in multiple populations Nature genetics38:1298-303 2006 |
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| Bataillon T, Mailund T, Thorlacius S, Steingrimsson E, Rafnar T, Halldorsson MM, Calian V, Schierup MH, The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers European journal of human genetics : EJHG14:1044-53 2006 |
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| Bonnycastle LL, Willer CJ, Conneely KN, Jackson AU, Burrill CP, Watanabe RM, Chines PS, Narisu N, Scott LJ, Enloe ST, Swift AJ, Duren WL, Stringham HM, Erdos MR, Riebow NL, Buchanan TA, Valle TT, Tuomilehto J, Bergman RN, Mohlke KL, Boehnke M, Collins FS, Common variants in maturity-onset diabetes of the young genes contribute to risk of type 2 diabetes in Finns Diabetes55:2534-40 2006 |
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| Bibikova M, Chudin E, Arsanjani A, Zhou L, Garcia EW, Modder J, Kostelec M, Barker D, Downs T, Fan JB, Wang-Rodriguez J, Expression signatures that correlated with Gleason score and relapse in prostate cancer Genomics89:666-72 2006 |
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| Kim KS, Kim GS, Hwang JY, Lee HJ, Park MH, Kim KJ, Jung J, Cha HS, Shin HD, Kang JH, Park EK, Kim TH, Hong JM, Koh JM, Oh B, Kimm K, Kim SY, Lee JY, Single nucleotide polymorphisms in bone turnover-related genes in Koreans: Ethnic differences in linkage disequilibrium and haplotype BMC Med Genet8(1):70 2006 |
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| McPartland JM, Norris RW, Kilpatrick CW, Tempo and mode in the endocannaboinoid system Journal of molecular evolution65:267-76 2006 |
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| Rioux JD, Xavier RJ, Taylor KD, Silverberg MS, Goyette P, Huett A, Green T, Kuballa P, Barmada MM, Datta LW, Shugart YY, Griffiths AM, Targan SR, Ippoliti AF, Bernard EJ, Mei L, Nicolae DL, Regueiro M, Schumm LP, Steinhart AH, Rotter JI, Duerr RH, Cho JH, Daly MJ, Brant SR, Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis Nature genetics39:596-604 2006 |
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| Gao X, Starmer J, Human population structure detection via multilocus genotype clustering BMC genetics8:34 2006 |
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| Hull J, Campino S, Rowlands K, Chan MS, Copley RR, Taylor MS, Rockett K, Elvidge G, Keating B, Knight J, Kwiatkowski D, Identification of common genetic variation that modulates alternative splicing PLoS genetics3:e99 2006 |
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| Dixon AL, Liang L, Moffatt MF, Chen W, Heath S, Wong KC, Taylor J, Burnett E, Gut I, Farrall M, Lathrop GM, Abecasis GR, Cookson WO, A genome-wide association study of global gene expression Nature genetics39:1202-7 2006 |
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| Tang K, Thornton KR, Stoneking M, A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome PLoS Biol5:e171 2006 |
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| Tang F, Qu M, Wang L, Ruan Y, Lu T, Zhang H, Liu Z, Yue W, Zhang D, Case-control association study of the 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP) gene and schizophrenia in the Han Chinese population Neuroscience letters416:113-6 2006 |
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| Newman TL, Rieder MJ, Morrison VA, Sharp AJ, Smith JD, Sprague LJ, Kaul R, Carlson CS, Olson MV, Nickerson DA, Eichler EE, High-throughput genotyping of intermediate-size structural variation Human molecular genetics15:1159-67 2006 |
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| Pastinen T, Ge B, Hudson TJ, Influence of human genome polymorphism on gene expression Human molecular genetics15 Spec No 1:R9-16 2006 |
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| Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, Cheung VG, Common genetic variants account for differences in gene expression among ethnic groups Nature genetics39:226-31 2006 |
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| Yeager M, Orr N, Hayes RB, Jacobs KB, Kraft P, Wacholder S, Minichiello MJ, Fearnhead P, Yu K, Chatterjee N, Wang Z, Welch R, Staats BJ, Calle EE, Feigelson HS, Thun MJ, Rodriguez C, Albanes D, Virtamo J, Weinstein S, Schumacher FR, Giovannucci E, Willett WC, Cancel-Tassin G, Cussenot O, Valeri A, Andriole GL, Gelmann EP, Tucker M, Gerhard DS, Fraumeni JF, Hoover R, Hunter DJ, Chanock SJ, Thomas G, Genome-wide association study of prostate cancer identifies a second risk locus at 8q24 Nature Genetics39:645-649 2006 |
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| Yu CE, Seltman H, Peskind ER, Galloway N, Zhou PX, Rosenthal E, Wijsman EM, Tsuang DW, Devlin B, Schellenberg GD, Comprehensive analysis of APOE and selected proximate markers for late-onset Alzheimer's disease: Patterns of linkage disequilibrium and disease/marker association Genomics89:655-665 2006 |
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| Zaitlen N, Kang HM, Eskin E, Halperin E, Leveraging the HapMap correlation structure in association studies American journal of human genetics80:683-91 2006 |
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| Auro K, Komulainen K, Alanne M, Silander K, Peltonen L, Perola M, Salomaa V, Thrombomodulin gene polymorphisms and haplotypes and the risk of cardiovascular events: a prospective follow-up study Arteriosclerosis, thrombosis, and vascular biology26:942-7 2006 |
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| Herbert A, Gerry NP, McQueen MB, Heid IM, Pfeufer A, Illig T, Wichmann HE, Meitinger T, Hunter D, Hu FB, Colditz G, Hinney A, Hebebrand J, Koberwitz K, Zhu X, Cooper R, Ardlie K, Lyon H, Hirschhorn JN, Laird NM, Lenburg ME, Lange C, Christman MF, A common genetic variant is associated with adult and childhood obesity Science312:279-83 2006 |
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| Kathiresan S, Larson MG, Vasan RS, Guo CY, Gona P, Keaney JF, Wilson PW, Newton-Cheh C, Musone SL, Camargo AL, Drake JA, Levy D, O'Donnell CJ, Hirschhorn JN, Benjamin EJ, Contribution of clinical correlates and 13 C-reactive protein gene polymorphisms to interindividual variability in serum C-reactive protein level Circulation113:1415-23 2006 |
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| Garcia-Barcelo M, So MT, Lau DK, Leon TY, Yuan ZW, Cai WS, Lui VC, Fu M, Herbrick JA, Gutter E, Proud V, Li L, Pierre-Louis J, Aleck K, van Heurn E, Belloni E, Scherer SW, Tam PK, Population differences in the polyalanine domain and 6 new mutations in HLXB9 in patients with Currarino syndrome. Clin Chem52(1):46-52 2006 |
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| Taylor JA, Xu ZL, Kaplan NL, Morris RW, How well do HapMap haplotypes identify common haplotypes of genes? A comparison with haplotypes of 334 genes resequenced in the environmental genome project. Cancer Epidemiol Biomarkers Prev15(1):133-7 2006 |
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| Zhu H, Yang W, Lu W, Zhang J, Shaw GM, Lammer EJ, Finnell RH, A known functional polymorphism (Ile120Val) of the human PCMT1 gene and risk of spina bifida. Mol Genet Metab87(1):66-70 2006 |
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| Greenawalt DM, Cui X, Wu Y, Lin Y, Wang HY, Luo M, Tereshchenko IV, Hu G, Li JY, Chu Y, Azaro MA, Decoste CJ, Chimge NO, Gao R, Shen L, Shih WJ, Lange K, Li H, Strong correlation between meiotic crossovers and haplotype structure in a 2.5-Mb region on the long arm of chromosome 21. Genome Res16(2):208-14 2006 |
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| Ribas G, Gonzalez-Neira A, Salas A, Milne RL, Vega A, Carracedo B, Gonzalez E, Barroso E, Fernandez LP, Yankilevich P, Robledo M, Carracedo A, Benitez J., Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes. Hum Genet118(6):669-79 2006 |
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| Stankovich J, Cox CJ, Tan RB, Montgomery DS, Huxtable SJ, Rubio JP, Ehm MG, Johnson L, Butzkueven H, Kilpatrick TJ, Speed TP, Roses AD, Bahlo M, Foote SJ, On the utility of data from the International HapMap Project for Australian association studies. Hum Genet119(1-2):220-2 2006 |
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| Helgadottir A, Manolescu A, Helgason A, Thorleifsson G, Thorsteinsdottir U, Gudbjartsson DF, Gretarsdottir S, Magnusson KP, Gudmundsson G, Hicks A, Jonsson T, Grant SF, Sainz J, O'Brien SJ, Sveinbjornsdottir S, Valdimarsson EM, Matthiasson SE, Levey AI, Abramson JL, Reilly MP, Vaccarino V, Wolfe ML, Gudnason V, Quyyumi AA, Topol EJ, Rader DJ, Thorgeirsson G, Gulcher JR, Hakonarson H, Kong A, Stefansson K, A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet38(1):68-74 2006 |
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| Skelding KA, Gerhard GS, Simari RD, Holmes DR, The effect of HapMap on cardiovascular research and clinical practice Nature clinical practice Cardiovascular medicine4:136-42 2006 |
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