HAPMAPPT02
96 WELL PLATE OF DNA SAMPLES
Description:
INTERNATIONAL HAPMAP PROJECT - JAPANESE IN TOKYO, JAPAN AND HAN CHINESE IN BEIJING, CHINA (I)
Aliquot Size:
50 µg each
Sex:
Males: 45 Females: 45
Brief Description:
The HAPMAPPT02 plate of 90 individual samples, includes 45 Japanese in Tokyo and 45 Han Chinese in Beijing. In addition, there are 5 duplicated samples and 1 buffer control. The concentration of each DNA sample to be plated is normalized and then this concentration is verified. The DNA concentration is 250 ng/µl and there are 50 µg of DNA per well. Once all samples are in place, a DNA fingerprint is determined for each sample to verify the identity on the plate. The specific position on the plates has been optimized by NHGRI to reduce any possible errors in sample identity during the genotyping process. The positions of the 5 duplicated samples and 1 buffer control are indicated by gray shading.Subsequent to submission and the establishment of cell lines in this panel, a detailed analysis of HapMap data has shown that there are previously unreported family relationships to other members of this panel, as described in Nature 437:1299-1320 (2005). (See Supplementary Table 15 and Supplementary Information on p.12 [PMID: 16255080]).
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| The International HapMap Consortium , (Participants are arranged by institution and then alphabetically within institutions except for Principal Investigators and Project Leaders, as indicated.) , Genotyping centres: Perlegen Sciences , Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Baylor College of Medicine and ParAllele BioScience LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Beijing Genomics Institute F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Broad Institute of Harvard and Massachusetts Institute of Technology J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Chinese National Human Genome Center at Beijing D, Shen Y, Yao Z, Chinese National Human Genome Center at Shanghai Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Chinese University of Hong Kong L, Waye MM, Tsui SK, Hong Kong University of Science and Technology SK, Xue H, Wong JT, Illumina JT, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, McGill University and Génome Québec Innovation Centre MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, University of California at San Francisco and Washington University TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, University of Hong Kong M, Tsui LC, Mak W, Qiang Song Y, Tam PK, University of Tokyo and RIKEN PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Wellcome Trust Sanger Institute T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Analysis groups: Broad Institute DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Cold Spring Harbor Laboratory D, Stein LD, Krishnan L, Vernon Smith A, Tello-Ruiz MK, Thorisson GA, Johns Hopkins University School of Medicine GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, University of Michigan S, Abecasis GR, Guan W, Li Y, Munro HM, Steve Qin Z, Thomas DJ, University of Oxford DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, University of Oxford,Wellcome Trust Centre for Human Genetics P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, RIKEN BS, Tsunoda T, US National Institutes of Health T, Mullikin JC, US National Institutes of Health National Center for Biotechnology Information JC, Sherry ST, Feolo M, Skol A, Community engagement/public consultation and sample collection groups: Beijing Normal University and Beijing Genomics Institute A, Zhang H, Zeng C, Zhao H, Health Sciences University of Hokkaido, Eubios Ethics Institute, and Shinshu University H, Matsuda I, Fukushima Y, Macer DR, Suda E, Howard University and University of Ibadan E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, University of Utah CD, Leppert MF, Dixon M, Peiffer A, Ethical, legal and social issues: Chinese Academy of Social Sciences A, Qiu R, Genetic Interest Group R, Kent A, Kyoto University A, Kato K, Nagasaki University K, Niikawa N, University of Ibadan School of Medicine N, Adewole IF, University of Montréal IF, Knoppers BM, University of Oklahoma BM, Foster MW, Vanderbilt University MW, Wright Clayton E, Wellcome Trust E, Watkin J, SNP discovery: Baylor College of Medicine J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Broad Institute of Harvard and Massachusetts Institute of Technology I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Washington University D, Wilson RK, Fulton LL, Wellcome Trust Sanger Institute LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Scientific management: Chinese Academy of Sciences DL, Chen Z, Han H, Kang L, Genome Canada L, Godbout M, Wallenburg JC, Génome Québec JC, L'archevêque P, Bellemare G, Japanese Ministry of Education, Culture, Sports, Science and Technology G, Saeki K, Ministry of Science and Technology of the People’s Republic of China K, Wang H, An D, Fu H, Li Q, Wang Z, The Human Genetic Resource Administration of China Z, Wang R, The SNP Consortium R, Holden AL, US National Institutes of Health AL, Brooks LD, McEwen JE, Guyer MS, Ota Wang V, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Wellcome Trust FS, Kennedy K, Jamieson R, Stewart J, A second generation human haplotype map of over 31 million SNPs Nature449:851-861 2007 |
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| Teo YY, Inouye M, Small KS, Gwilliam R, Deloukas P, Kwiatkowski DP, Clark TG, A genotype calling algorithm for the Illumina BeadArray platform Bioinformatics (Oxford, England)23:2741-6 2007 |
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| van Es MA, Van Vught PW, Blauw HM, Franke L, Saris CG, Andersen PM, Van Den Bosch L, de Jong SW, van 't Slot R, Birve A, Lemmens R, de Jong V, Baas F, Schelhaas HJ, Sleegers K, Van Broeckhoven C, Wokke JH, Wijmenga C, Robberecht W, Veldink JH, Ophoff RA, van den Berg LH, ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study Lancet neurology6:869-77 2007 |
| PubMed ID: 17827064 |
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| Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET, Population genomics of human gene expression Nature genetics39:1217-24 2007 |
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| Shi J, Hattori E, Zou H, Badner JA, Christian SL, Gershon ES, Liu C, No evidence for association between 19 cholinergic genes and bipolar disorder American journal of medical genetics Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics144:715-23 2007 |
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| Stefansson H, Rye DB, Hicks A, Petursson H, Ingason A, Thorgeirsson TE, Palsson S, Sigmundsson T, Sigurdsson AP, Eiriksdottir I, Soebech E, Bliwise D, Beck JM, Rosen A, Waddy S, Trotti LM, Iranzo A, Thambisetty M, Hardarson GA, Kristjansson K, Gudmundsson LJ, Thorsteinsdottir U, Kong A, Gulcher JR, Gudbjartsson D, Stefansson K, A genetic risk factor for periodic limb movements in sleep The New England journal of medicine357:639-47 2007 |
| PubMed ID: 17634447 |
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| Stokowski RP, Pant PV, Dadd T, Fereday A, Hinds DA, Jarman C, Filsell W, Ginger RS, Green MR, van der Ouderaa FJ, Cox DR, A genomewide association study of skin pigmentation in a South Asian population American journal of human genetics81:1119-32 2007 |
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| Salonen JT, Uimari P, Aalto JM, Pirskanen M, Kaikkonen J, Todorova B, Hyppönen J, Korhonen VP, Asikainen J, Devine C, Tuomainen TP, Luedemann J, Nauck M, Kerner W, Stephens RH, New JP, Ollier WE, Gibson JM, Payton A, Horan MA, Pendleton N, Mahoney W, Meyre D, Delplanque J, Froguel P, Luzzatto O, Yakir B, Darvasi A, Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium American journal of human genetics81:338-45 2007 |
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| Samani NJ, Erdmann J, Hall AS, Hengstenberg C, Mangino M, Mayer B, Dixon RJ, Meitinger T, Braund P, Wichmann HE, Barrett JH, König IR, Stevens SE, Szymczak S, Tregouet DA, Iles MM, Pahlke F, Pollard H, Lieb W, Cambien F, Fischer M, Ouwehand W, Blankenberg S, Balmforth AJ, Baessler A, Ball SG, Strom TM, Braenne I, Gieger C, Deloukas P, Tobin MD, Ziegler A, Thompson JR, Schunkert H, WTCCC and the Cardiogenics Consortium H, Genomewide association analysis of coronary artery disease The New England journal of medicine357:443-53 2007 |
| PubMed ID: 17634449 |
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| Shen GQ, Li L, Girelli D, Seidelmann SB, Rao S, Fan C, Park JE, Xi Q, Li J, Hu Y, Olivieri O, Marchant K, Barnard J, Corrocher R, Elston R, Cassano J, Henderson S, Hazen SL, Plow EF, Topol EJ, Wang QK, An LRP8 variant is associated with familial and premature coronary artery disease and myocardial infarction American journal of human genetics81:780-91 2007 |
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| Paschou P, Ziv E, Burchard EG, Choudhry S, Rodriguez-Cintron W, Mahoney MW, Drineas P, PCA-correlated SNPs for structure identification in worldwide human populations PLoS genetics3:1672-86 2007 |
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| Plenge RM, Seielstad M, Padyukov L, Lee AT, Remmers EF, Ding B, Liew A, Khalili H, Chandrasekaran A, Davies LR, Li W, Tan AK, Bonnard C, Ong RT, Thalamuthu A, Pettersson S, Liu C, Tian C, Chen WV, Carulli JP, Beckman EM, Altshuler D, Alfredsson L, Criswell LA, Amos CI, Seldin MF, Kastner DL, Klareskog L, Gregersen PK, TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study The New England journal of medicine357:1199-209 2007 |
| PubMed ID: 17804836 |
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| Plenge RM, Cotsapas C, Davies L, Price AL, de Bakker PI, Maller J, Pe'er I, Burtt NP, Blumenstiel B, DeFelice M, Parkin M, Barry R, Winslow W, Healy C, Graham RR, Neale BM, Izmailova E, Roubenoff R, Parker AN, Glass R, Karlson EW, Maher N, Hafler DA, Lee DM, Seldin MF, Remmers EF, Lee AT, Padyukov L, Alfredsson L, Coblyn J, Weinblatt ME, Gabriel SB, Purcell S, Klareskog L, Gregersen PK, Shadick NA, Daly MJ, Altshuler D, Two independent alleles at 6q23 associated with risk of rheumatoid arthritis Nature genetics39:1477-82 2007 |
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| Raelson JV, Little RD, Ruether A, Fournier H, Paquin B, Van Eerdewegh P, Bradley WE, Croteau P, Nguyen-Huu Q, Segal J, Debrus S, Allard R, Rosenstiel P, Franke A, Jacobs G, Nikolaus S, Vidal JM, Szego P, Laplante N, Clark HF, Paulussen RJ, Hooper JW, Keith TP, Belouchi A, Schreiber S, Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci Proceedings of the National Academy of Sciences of the United States of America104:14747-52 2007 |
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| Ramírez J, Liu W, Mirkov S, Desai AA, Chen P, Das S, Innocenti F, Ratain MJ, Lack of association between common polymorphisms in UGT1A9 and gene expression and activity Drug metabolism and disposition: the biological fate of chemicals35:2149-53 2007 |
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| Nannya Y, Taura K, Kurokawa M, Chiba S, Ogawa S, Evaluation of genome-wide power of genetic association studies based on empirical data from the HapMap project Human molecular genetics16:3494-505 2007 |
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| Newton-Cheh C, Guo CY, Wang TJ, O'donnell CJ, Levy D, Larson MG, Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study BMC medical genetics8 Suppl 1:S7 2007 |
| PubMed ID: 17903306 |
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| No authors listed, Second Phase of HapMap project completed Pharmacogenomics8(11):1489-91 2007 |
| PubMed ID: 18034613 |
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| Nunkesser R, Bernholt T, Schwender H, Ickstadt K, Wegener I, Detecting high-order interactions of single nucleotide polymorphisms using genetic programming Bioinformatics (Oxford, England)23:3280-8 2007 |
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| McCauley JL, Kenealy SJ, Margulies EH, Schnetz-Boutaud N, Gregory SG, Hauser SL, Oksenberg JR, Pericak-Vance MA, Haines JL, Mortlock DP, SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach BMC genomics8:266 2007 |
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| Lesueur F, Oudot T, Heath S, Foglio M, Lathrop M, Prud'homme JF, Fischer J, ADAM33, a new candidate for psoriasis susceptibility PLoS ONE2:e906 2007 |
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| Huang QY, Kung AW, The association of common polymorphisms in the QPCT gene with bone mineral density in the Chinese population Journal of human genetics52:757-62 2007 |
| PubMed ID: 17687619 |
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| Huang RS, Duan S, Shukla SJ, Kistner EO, Clark TA, Chen TX, Schweitzer AC, Blume JE, Dolan ME, Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach American journal of human genetics81:427-37 2007 |
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| Huggins P, Pachter L, Sturmfels B, Toward the human genotope Bulletin of mathematical biology69:2723-35 2007 |
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| Keinan A, Mullikin JC, Patterson N, Reich D, Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans Nature genetics39:1251-5 2007 |
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| Kohler JR, Cutler DJ, Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies American journal of human genetics81:684-99 2007 |
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| Kwan T, Benovoy D, Dias C, Gurd S, Serre D, Zuzan H, Clark TA, Schweitzer A, Staples MK, Wang H, Blume JE, Hudson TJ, Sladek R, Majewski J, Heritability of alternative splicing in the human genome Genome research17:1210-8 2007 |
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| Lamba JK, Crews K, Pounds S, Schuetz EG, Gresham J, Gandhi V, Plunkett W, Rubnitz J, Ribeiro R, Pharmacogenetics of deoxycytidine kinase: identification and characterization of novel genetic variants The Journal of pharmacology and experimental therapeutics323:935-45 2007 |
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| Lamy P, Andersen L, Dyrskjot L, Torring N, Wiuf C, A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays BMC Bioinformatics8(1):434 2007 |
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| Lee H, Sininger L, Jen JC, Cha YH, Baloh RW, Nelson SF, Association of progesterone receptor with migraine-associated vertigo Neurogenetics8:195-200 2007 |
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| Askew DJ, Cataltepe S, Kumar V, Edwards C, Pace SM, Howarth RN, Pak SC, Askew YS, Brömme D, Luke CJ, Whisstock JC, Silverman GA, SERPINB11 Is a New Noninhibitory Intracellular Serpin: COMMON SINGLE NUCLEOTIDE POLYMORPHISMS IN THE SCAFFOLD IMPAIR CONFORMATIONAL CHANGE The Journal of biological chemistry282:24948-60 2007 |
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| Hunter DJ, Kraft P, Jacobs KB, Cox DG, Yeager M, Hankinson SE, Wacholder S, Wang Z, Welch R, Hutchinson A, Wang J, Yu K, Chatterjee N, Orr N, Willett WC, Colditz GA, Ziegler RG, Berg CD, Buys SS, McCarty CA, Feigelson HS, Calle EE, Thun MJ, Hayes RB, Tucker M, Gerhard DS, Fraumeni JF, Hoover RN, Thomas G, Chanock SJ, A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer Nature genetics39:870-4 2007 |
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| Johansson A, Vavruch-Nilsson V, Cox DR, Frazer KA, Gyllensten U, Evaluation of the SNP tagging approach in an independent population sample-array-based SNP discovery in Sami Human genetics122:141-50 2007 |
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| King TM, Au KS, Kirkpatrick TJ, Davidson C, Fletcher JM, Townsend I, Tyerman GH, Shimmin LC, Northrup H, The Impact of BRCA1 on Spina Bifida Meningomyelocele Lesions Ann Hum Genet71(Pt6):719-28 2007 |
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| Klitø NG, Tan Q, Nyegaard M, Brusgaard K, Thomassen M, Skouboe C, Dahlgaard J, Kruse TA, Arrayed primer extension in the "array of arrays" format: a rational approach for microarray-based SNP genotyping Genetic testing11:160-6 2007 |
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| Kullo IJ, Ding K, Patterns of population differentiation of candidate genes for cardiovascular disease BMC genetics8:48 2007 |
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| Leak TS, Keene KL, Langefeld CD, Gallagher CJ, Mychaleckyj JC, Freedman BI, Bowden DW, Rich SS, Sale MM, Association of the proprotein convertase subtilisin/kexin-type 2 (PCSK2) gene with type 2 diabetes in an African American population Mol Genet Metab92(1-2):145-50 2007 |
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| Lie BA, Viken MK, Akselsen HE, Flåm ST, Pociot F, Nerup J, Kockum I, Cambon-Thomsen A, Thorsby E, Undlien DE, Association analysis in type 1 diabetes of the PRSS16 gene encoding a thymus-specific serine protease Human immunology68:592-8 2007 |
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| Mägi R, Pfeufer A, Nelis M, Montpetit A, Metspalu A, Remm M, Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation BMC genomics8:159 2007 |
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| Marchini J, Howie B, Myers S, McVean G, Donnelly P, A new multipoint method for genome-wide association studies by imputation of genotypes Nature genetics39:906-13 2007 |
| PubMed ID: 17572673 |
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| Marvelle F, Lange A, Qin L, Wang Y, Lange M, Adair S, Mohlke L, Comparison of ENCODE region SNPs between Cebu Filipino and Asian HapMap samples Journal of Human Genetics52(9):729-37 2007 |
| PubMed ID: 17636361 |
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| Matarín M, Brown WM, Scholz S, Simón-Sánchez J, Fung HC, Hernandez D, Gibbs JR, De Vrieze FW, Crews C, Britton A, Langefeld CD, Brott TG, Brown RD, Worrall BB, Frankel M, Silliman S, Case LD, Singleton A, Hardy JA, Rich SS, Meschia JF, A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release Lancet neurology6:414-20 2007 |
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| McPherson R, Pertsemlidis A, Kavaslar N, Stewart A, Roberts R, Cox DR, Hinds DA, Pennacchio LA, Tybjaerg-Hansen A, Folsom AR, Boerwinkle E, Hobbs HH, Cohen JC, A common allele on chromosome 9 associated with coronary heart disease Science316:1488-91 2007 |
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| Moffatt MF, Kabesch M, Liang L, Dixon AL, Strachan D, Heath S, Depner M, von Berg A, Bufe A, Rietschel E, Heinzmann A, Simma B, Frischer T, Willis-Owen SA, Wong KC, Illig T, Vogelberg C, Weiland SK, von Mutius E, Abecasis GR, Farrall M, Gut IG, Lathrop GM, Cookson WO, Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma Nature448:470-3 2007 |
| PubMed ID: 17611496 |
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| Ohnishi T, Yamada K, Ohba H, Iwayama Y, Toyota T, Hattori E, Inada T, Kunugi H, Tatsumi M, Ozaki N, Iwata N, Sakamoto K, Iijima Y, Iwata Y, Tsuchiya KJ, Sugihara G, Nanko S, Osumi N, Detera-Wadleigh SD, Kato T, Yoshikawa T, A promoter haplotype of the inositol monophosphatase 2 gene (IMPA2) at 18p112 confers a possible risk for bipolar disorder by enhancing transcription Neuropsychopharmacology32:1727-37 2007 |
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| Pal P, Xi H, Sun G, Kaushal R, Meeks J, Thaxton Shad, Guha S, Jin H, Suarez K, Catalona J, Deka R, Tagging SNPs in the kallikrein genes 3 and 2 on 19q13 and their associations with prostate cancer in men of European origin Human Genetics122(3-4):251-9 2007 |
| PubMed ID: 17593395 |
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| Pickrell J, Clerget-Darpoux F, Bourgain C, Power of genome-wide association studies in the presence of interacting loci Genet Epidemiol31(7):48-62 2007 |
| PubMed ID: 17508359 |
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| Post W, Shen H, Damcott C, Arking DE, Kao WH, Sack PA, Ryan KA, Chakravarti A, Mitchell BD, Shuldiner AR, Associations between genetic variants in the NOS1AP (CAPON) gene and cardiac repolarization in the old order Amish Human heredity64:214-9 2007 |
| PubMed ID: 17565224 |
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| Rezende VB, Barbosa F, Montenegro MF, Sandrim VC, Gerlach RF, Tanus-Santos JE, An interethnic comparison of the distribution of vitamin D receptor genotypes and haplotypes Clinica chimica acta384:155-9 2007 |
| PubMed ID: 17582391 |
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| Beyens G, Daroszewska A, de Freitas F, Fransen E, Vanhoenacker F, Verbruggen L, Zmierczak HG, Westhovens R, Van Offel J, Ralston SH, Devogelaer JP, Van Hul W, Identification of sex-specific associations between polymorphisms of the osteoprotegerin gene, TNFRSF11B, and Paget's disease of bone Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research22:1062-71 2007 |
| PubMed ID: 17388729 |
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| Gudbjartsson DF, Arnar DO, Helgadottir A, Gretarsdottir S, Holm H, Sigurdsson A, Jonasdottir A, Baker A, Thorleifsson G, Kristjansson K, Palsson A, Blondal T, Sulem P, Backman VM, Hardarson GA, Palsdottir E, Helgason A, Sigurjonsdottir R, Sverrisson JT, Kostulas K, Ng MC, Baum L, So WY, Wong KS, Chan JC, Furie KL, Greenberg SM, Sale M, Kelly P, MacRae CA, Smith EE, Rosand J, Hillert J, Ma RC, Ellinor PT, Thorgeirsson G, Gulcher JR, Kong A, Thorsteinsdottir U, Stefansson K, Variants conferring risk of atrial fibrillation on chromosome 4q25 Nature448:353-7 2007 |
| PubMed ID: 17603472 |
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| Gudmundsson J, Sulem P, Steinthorsdottir V, Bergthorsson JT, Thorleifsson G, Manolescu A, Rafnar T, Gudbjartsson D, Agnarsson BA, Baker A, Sigurdsson A, Benediktsdottir KR, Jakobsdottir M, Blondal T, Stacey SN, Helgason A, Gunnarsdottir S, Olafsdottir A, Kristinsson KT, Birgisdottir B, Ghosh S, Thorlacius S, Magnusdottir D, Stefansdottir G, Kristjansson K, Bagger Y, Wilensky RL, Reilly MP, Morris AD, Kimber CH, Adeyemo A, Chen Y, Zhou J, So WY, Tong PC, Ng MC, Hansen T, Andersen G, Borch-Johnsen K, Jorgensen T, Tres A, Fuertes F, Ruiz-Echarri M, Asin L, Saez B, van Boven E, Klaver S, Swinkels DW, Aben KK, Graif T, Cashy J, Suarez BK, van Vierssen Trip O, Frigge ML, Ober C, Hofker MH, Wijmenga C, Christiansen C, Rader DJ, Palmer CN, Rotimi C, Chan JC, Pedersen O, Sigurdsson G, Benediktsson R, Jonsson E, Einarsson GV, Mayordomo JI, Catalona WJ, Kiemeney LA, Barkardottir RB, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes Nature genetics39:977-83 2007 |
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| Hakonarson H, Grant SF, Bradfield JP, Marchand L, Kim CE, Glessner JT, Grabs R, Casalunovo T, Taback SP, Frackelton EC, Lawson ML, Robinson LJ, Skraban R, Lu Y, Chiavacci RM, Stanley CA, Kirsch SE, Rappaport EF, Orange JS, Monos DS, Devoto M, Qu HQ, Polychronakos C, A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene Nature448:591-4 2007 |
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| Hamvas A, Wegner DJ, Carlson CS, Bergmann KR, Trusgnich MA, Fulton L, Kasai Y, An P, Mardis ER, Wilson RK, Cole FS, Comprehensive genetic variant discovery in the surfactant protein B gene Pediatric research62:170-5 2007 |
| PubMed ID: 17597650 |
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| Helgadottir A, Thorleifsson G, Manolescu A, Gretarsdottir S, Blondal T, Jonasdottir A, Jonasdottir A, Sigurdsson A, Baker A, Palsson A, Masson G, Gudbjartsson DF, Magnusson KP, Andersen K, Levey AI, Backman VM, Matthiasdottir S, Jonsdottir T, Palsson S, Einarsdottir H, Gunnarsdottir S, Gylfason A, Vaccarino V, Hooper WC, Reilly MP, Granger CB, Austin H, Rader DJ, Shah SH, Quyyumi AA, Gulcher JR, Thorgeirsson G, Thorsteinsdottir U, Kong A, Stefansson K, A common variant on chromosome 9p21 affects the risk of myocardial infarction Science316:1491-3 2007 |
| PubMed ID: 17478679 |
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| Huang BE, Amos CI, Lin DY, Detecting haplotype effects in genomewide association studies Genet Epidemiol31(8):803-812 2007 |
| PubMed ID: 17549762 |
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| Eberle MA, Ng PC, Kuhn K, Zhou L, Peiffer DA, Galver L, Viaud-Martinez KA, Lawley CT, Gunderson KL, Shen R, Murray SS, Power to detect risk alleles using genome-wide tag SNP panels PLoS genetics3:1827-37 2007 |
| PubMed ID: 17922574 |
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| Enomoto H, Noguchi E, Iijima S, Takahashi T, Hayakawa K, Ito M, Kano T, Aoki T, Suzuki Y, Koga M, Tamari M, Shiohara T, Otsuka F, Arinami T, Single nucleotide polymorphism-based genome-wide linkage analysis in Japanese atopic dermatitis families BMC dermatology7:5 2007 |
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| Estivill X, Armengol L, Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies PLoS genetics3:1787-99 2007 |
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| Hanchard N, Elzein A, Trafford C, Rockett K, Pinder M, Jallow M, Harding R, Kwiatkowski D, McKenzie C, Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations BMC genetics8:52 2007 |
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| Hao K, Genome-wide selection of tag SNPs using multiple-marker correlation Bioinformatics (Oxford, England)23:3178-84 2007 |
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| Crespi B, Summers K, Dorus S, Adaptive evolution of genes underlying schizophrenia Proceedings Biological sciences / The Royal Society274:2801-10 2007 |
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| Sun S, Greenwood CM, Neal RM, Haplotype inference using a Bayesian Hidden Markov model Genet Epidemiol31(8):937-948 2007 |
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| van Heel DA, Franke L, Hunt KA, Gwilliam R, Zhernakova A, Inouye M, Wapenaar MC, Barnardo MC, Bethel G, Holmes GK, Feighery C, Jewell D, Kelleher D, Kumar P, Travis S, Walters JR, Sanders DS, Howdle P, Swift J, Playford RJ, McLaren WM, Mearin ML, Mulder CJ, McManus R, McGinnis R, Cardon LR, Deloukas P, Wijmenga C, A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21 Nature genetics39:827-9 2007 |
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| Wellcome Trust Case Control Consortium, Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls Nature447:661-78 2007 |
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| Xu Z, Kaplan NL, Taylor JA, Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data European Journal of Human Genetics15(10):1063-70 2007 |
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| Zanke BW, Greenwood CM, Rangrej J, Kustra R, Tenesa A, Farrington SM, Prendergast J, Olschwang S, Chiang T, Crowdy E, Ferretti V, Laflamme P, Sundararajan S, Roumy S, Olivier JF, Robidoux F, Sladek R, Montpetit A, Campbell P, Bezieau S, O'shea AM, Zogopoulos G, Cotterchio M, Newcomb P, McLaughlin J, Younghusband B, Green R, Green J, Porteous ME, Campbell H, Blanche H, Sahbatou M, Tubacher E, Bonaiti-Pellié C, Buecher B, Riboli E, Kury S, Chanock SJ, Potter J, Thomas G, Gallinger S, Hudson TJ, Dunlop MG, Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24 Nature Genetics39:989-994 2007 |
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| Zeggini E, Weedon MN, Lindgren CM, Frayling TM, Elliott KS, Lango H, Timpson NJ, Perry JR, Rayner NW, Freathy RM, Barrett JC, Shields B, Morris AP, Ellard S, Groves CJ, Harries LW, Marchini JL, Owen KR, Knight B, Cardon LR, Walker M, Hitman GA, Morris AD, Doney AS, Wellcome Trust Case Control Consortium (WTCCC) AS, Burton PR, Clayton DG, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, Ouwehand WH, Samani NJ, Todd JA, Donnelly P, Davison D, Easton D, Evans D, Leung HT, Spencer CC, Tobin MD, Attwood AP, Boorman JP, Cant B, Everson U, Hussey JM, Jolley JD, Knight AS, Koch K, Meech E, Nutland S, Prowse CV, Stevens HE, Taylor NC, Walters GR, Walker NM, Watkins NA, Winzer T, Jones RW, McArdle WL, Ring SM, Strachan DP, Pembrey M, Breen G, St Clair D, Caesar S, Gordon-Smith K, Jones L, Fraser C, Green EK, Grozeva D, Hamshere ML, Holmans PA, Jones IR, Kirov G, Moskvina V, Nikolov I, O'donovan MC, Owen MJ, Collier DA, Elkin A, Farmer A, Williamson R, McGuffin P, Young AH, Ferrier IN, Ball SG, Balmforth AJ, Barrett JH, Bishop DT, Iles MM, Maqbool A, Yuldasheva N, Hall AS, Braund PS, Dixon RJ, Mangino M, Stevens S, Thompson JR, Bredin F, Tremelling M, Parkes M, Drummond H, Lees CW, Nimmo ER, Satsangi J, Fisher SA, Forbes A, Lewis CM, Onnie CM, Prescott NJ, Sanderson J, Mathew CG, Barbour J, Mohiuddin MK, Todhunter CE, Mansfield JC, Ahmad T, Cummings FR, Jewell DP, Webster J, Brown MJ, Lathrop GM, Connell J, Dominiczak A, Braga Marcano CA, Burke B, Dobson R, Gungadoo J, Lee KL, Munroe PB, Newhouse SJ, Onipinla A, Wallace C, Xue M, Caulfield M, Farrall M, Barton A, Bruce IN, Donovan H, Eyre S, Gilbert PD, Hider SL, Hinks AM, John SL, Potter C, Silman AJ, Symmons DP, Thomson W, Worthington J, Dunger DB, Widmer B, Newport M, Sirugo G, Lyons E, Vannberg F, Hill AV, Bradbury LA, Farrar C, Pointon JJ, Wordsworth P, Brown MA, Franklyn JA, Heward JM, Simmonds MJ, Gough SC, Seal S, Stratton MR, Rahman N, Ban M, Goris A, Sawcer SJ, Compston A, Conway D, Jallow M, Rockett KA, Bumpstead SJ, Chaney A, Downes K, Ghori MJ, Gwilliam R, Hunt SE, Inouye M, Keniry A, King E, McGinnis R, Potter S, Ravindrarajah R, Whittaker P, Widden C, Withers D, Cardin NJ, Ferreira T, Pereira-Gale J, Hallgrimsdóttir IB, Howie BN, Su Z, Teo YY, Vukcevic D, Bentley D, Compston A, Ouwehand NJ, Samani MR, Isaacs JD, Morgan AW, Wilson GD, Ardern-Jones A, Berg J, Brady A, Bradshaw N, Brewer C, Brice G, Bullman B, Campbell J, Castle B, Cetnarsryj R, Chapman C, Chu C, Coates N, Cole T, Davidson R, Donaldson A, Dorkins H, Douglas F, Eccles D, Eeles R, Elmslie F, Evans DG, Goff S, Goodman S, Goudie D, Gray J, Greenhalgh L, Gregory H, Hodgson SV, Homfray T, Houlston RS, Izatt L, Jackson L, Jeffers L, Johnson-Roffey V, Kavalier F, Kirk C, Lalloo F, Langman C, Locke I, Longmuir M, Mackay J, Magee A, Mansour S, Miedzybrodzka Z, Miller J, Morrison P, Murday V, Paterson J, Pichert G, Porteous M, Rahman N, Rogers M, Rowe S, Shanley S, Saggar A, Scott G, Side L, Snadden L, Steel M, Thomas M, Thomas S, McCarthy MI, Hattersley AT, Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes Science316:1336-41 2007 |
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| Zhao ZZ, Nyholt DR, Le L, Thomas S, Engwerda C, Randall L, Treloar SA, Montgomery GW, Genetic variation in tumour necrosis factor and lymphotoxin is not associated with endometriosis in an Australian sample Human reproduction (Oxford, England)22:2389-97 2007 |
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| Cole W, Naj C, O'Connell R, Stine C, Sorkin D, Wozniak A, Stern J, Yepes M, Lawrence A, Reinhart J, Strickland K, Mitchell D, Kittner J, Neuroserpin polymorphisms and stroke risk in a biracial population: the stroke prevention in young women study BMC Neurol7(1):37 2007 |
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| Cooper D, Smyth J, Bailey R, Payne F, Downes K, Godfrey M, Masters J, Zeitels R, Vella A, Walker M, Todd A, The candidate genes TAF5L, TCF7, PDCD1, IL6 and ICAM1 cannot be excluded from having effects in type 1 diabetes BMC Med Genet8(1):71 2007 |
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| Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, The International HapMap Consortium ES, Genotyping centres: Perlegen Sciences ES, Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Baylor College of Medicine and ParAllele BioScience LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Beijing Genomics Institute F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Broad Institute of Harvard and Massachusetts Institute of Technology J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Chinese National Human Genome Center at Beijing D, Shen Y, Yao Z, Chinese National Human Genome Center at Shanghai Z, Huang W, Chu X, He Y, Jin L, Liu Y, 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| Christoforou A, Le Hellard S, Thomson PA, Morris SW, Tenesa A, Pickard BS, Wray NR, Muir WJ, Blackwood DH, Porteous DJ, Evans KL, Association analysis of the chromosome 4p15-p16 candidate region for bipolar disorder and schizophrenia Molecular psychiatry12:1011-25 2007 |
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| Silverberg MS, Duerr RH, Brant SR, Bromfield G, Datta LW, Jani N, Kane SV, Rotter JI, Philip Schumm L, Hillary Steinhart A, Taylor KD, Yang H, Cho JH, Rioux JD, Daly MJ, Refined genomic localization and ethnic differences observed for the IBD5 association with Crohn's disease European journal of human genetics : EJHG15:328-35 2007 |
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| Steemers FJ, Gunderson KL, Whole genome genotyping technologies on the BeadArray platform Biotechnology journal2:41-9 2007 |
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| Szeszko S, Healy B, Stevens H, Balabanova Y, Drobniewski F, Todd A, Nejentsev S, Resequencing and association analysis of the SP110 gene in adult pulmonary tuberculosis Hum Genet121(2):155-160 2007 |
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| Huang RS, Kistner EO, Bleibel WK, Shukla SJ, Dolan ME, Effect of population and gender on chemotherapeutic agent-induced cytotoxicity Molecular cancer therapeutics6:31-6 2007 |
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| Barnes KC, Grant AV, Hansel NN, Gao P, Dunston GM, African Americans with asthma: genetic insights Proceedings of the American Thoracic Society4:58-68 2007 |
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