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GM22030 LCL from B-Lymphocyte

Description:

PROPIONIC ACIDEMIA
PROPIONIC-COA CARBOXYLASE, BETA SUBUNIT; PCCB

Affected:

Yes

Sex:

Female

Age:

5 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Ethnicity Not Hispanic/Latino
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Clinically affected; diagnosed at age 1 week by newborn screening; failure to thrive; no family history; apnea; chronic long QT diagnosed at age 5 years; gut motility is slow; gastroesophageal reflux; 50% fed by mouth; G-tube; vomiting once a month or more; acute neutropenia; acute anemia; immune deficiency; acute low platelets; asthma; broken bones: nondisplaced proximal right fibula and distal right radius; short stature; first walked at 18 months of age; language is slightly below age level; talked at 2 years of age; age appropriate cognitive ability; episodes of ketoacidosis once a month or more; on metabolic formula and levocarnitine; hypothyroid; esophagitis; fibroblast carboxylases results: propionyl-CoA carboxylase (PCC) 21 pmol/min/mg protein (normal range is 91-500), 3-methylcrotonyl-CoA carboxylase (MCC) 136 pmol/min/mg protein (normal range is 31-220), and pyruvate carboxylase (PC) 305 pmol/min/mg protein (normal range is 71-370); donor subject is homozygous for a 2 bp deletion at nucleotide 1172 in exon 11 of the PCCB gene (c.1172_1173delTT)

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin confirmed by LINE assay
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 1 ; PROPIONIC ACIDEMIA
Identified Mutation 1172_1173delTT
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 2 ; PROPIONIC ACIDEMIA
Identified Mutation 1172_1173delTT

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 5 YR
Sex Female
Age at Diagnosis(If not a control) 1 WK
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
 
Data Elements
Clinical Element Type: Propionic Acidemia
  (Baseline)
Neonatal Data
Was this child newborn screened? yes   no  unknown 
If yes, was the result prior to hospitalization yes   no  unknown 
Weight at birth in kgs  2.52
Length at birth in cm  47
Was child breast-fed? yes  no   unknown 
Failure to thrive? yes   no  unknown 
Molecular/Enzyme Laboratory Test Results
Which Gene: PCCA? yes  no  unknown  
Which Gene: PCCB? yes  no  unknown  
Family History
Are there other family members with PA? yes  no   unknown 
Other affected relatives? yes  no   unknown 
Has the individual passed away?  No Data
Clinical Evaluation
Current weight in kgs  24.7
Current height in cms  106
Respiratory
Apnea yes   no  unknown 
Tachypnea yes  no   unknown 
Cardiovascular
Cardiomyopathy yes  no   unknown 
Long QT? yes   no  unknown 
If yes, type chronic   acute 
Age at diagnosis of long QT  5 YRS
Abdominal/Gastrointestinal
Pancreatitis chronic  acute  never noted  
Kidney problems yes  no   unknown 
Liver transplant yes  no   unknown 
Port-a-cath currently in place  not currently in place   never had one 
Gut motility normal  slow   requires medication  unknown 
List medications  REGLAN, MIRALAX
Reflux yes   no  unknown 
List medications  PREVACID, CARAFATE
Eating by mouth  1-50%
Tube fed yes   no  unknown 
If yes, what kind  G-tube
Vomiting  once a month or more
Are anti-emetics used for vomiting yes   no  unknown 
List medications  ZOFRAN
Neurologic
Basal ganglia damage yes  no   unknown 
If yes, determined by  No Data
Seizures yes  no   unknown 
Autism spectrum disorder yes  no   unknown 
ADD/ADHD yes  no   unknown 
Optic nerve damage yes  no   unknown 
Neutropenia chronic  acute   unknown 
List medications  NEUPOGEN
Anemia yes   no  unknown 
Immune deficiency yes   no  unknown 
Treated with IVIG yes   no  unknown 
Low platelets chronic  acute   not applicable  unknown 
Asthma yes   no  unknown 
Secondary hip dysplasia yes  no   unknown 
Broken bones yes   no  unknown 
If yes, type of fracture and location  PROXIMAL RT FIBULA/DISTAL RT RADIUS
Short stature yes   no  unknown 
Growth hormone treatment yes  no   unknown 
Osteoporosis yes  no  unknown  
Developmental Evaluation
Walking  100% of the time
Age when first walked  18 MONTHS
Language  slightly below age level
Age when first talked  2 YRS
Congitive ability  age appropriate
IQ known  untested  unsure  
Metabolic
Is the individual biotin responsive yes  no   unknown 
Episodes of ketoacidosis yes   no  unknown 
If yes, give frequency  once a month or more
Chronic hyperammonemia yes  no   unknown 
Is the individual currently on metabolic formula yes   no  unknown 
If yes, which ones Propimex
Pro-phree
Polcyose
Vitaflo
Is the individual taking levocarnitine yes   no  unknown 
If yes, mg/kg  81
Other supllements Thiamin
Remarks Clinically affected; diagnosed at age 1 week by newborn screening; failure to thrive; no family history; apnea; chronic long QT diagnosed at age 5 years; gut motility is slow; gastroesophageal reflux; 50% fed by mouth; G-tube; vomiting once a month or more; acute neutropenia; acute anemia; immune deficiency; acute low platelets; asthma; broken bones: nondisplaced proximal right fibula and distal right radius; short stature; first walked at 18 months of age; language is slightly below age level; talked at 2 years of age; age appropriate cognitive ability; episodes of ketoacidosis once a month or more; on metabolic formula and levocarnitine; hypothyroid; esophagitis; fibroblast carboxylases results: propionyl-CoA carboxylase (PCC) 21 pmol/min/mg protein (normal range is 91-500), 3-methylcrotonyl-CoA carboxylase (MCC) 136 pmol/min/mg protein (normal range is 31-220), and pyruvate carboxylase (PC) 305 pmol/min/mg protein (normal range is 71-370); donor subject is homozygous for a 2 bp deletion at nucleotide 1172 in exon 11 of the PCCB gene (c.1172_1173delTT)

External Links

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Gene Cards PCCB
Gene Ontology GO:0004075 biotin carboxylase activity
GO:0004658 propionyl-CoA carboxylase activity
GO:0005739 mitochondrion
GO:0009062 fatty acid catabolism
GO:0009343 biotin carboxylase complex
GO:0016874 ligase activity
GEO GEO Accession No: GSM1050477
GEO Accession No: GSM1050478
NCBI Gene Gene ID:5096
NCBI GTR 232050 PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT; PCCB
606054 PROPIONIC ACIDEMIA
OMIM 232050 PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT; PCCB
606054 PROPIONIC ACIDEMIA
Omim Description PROPIONIC ACIDEMIA

Culture Protocols

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Split Ratio 1:4
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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