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GM06966 Fibroblast

Description:

CYSTIC FIBROSIS; CF
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; CFTR

Affected:

Yes

Sex:

Male

Age:

6 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Class Disorders of Amino Acid Metabolism
Cell Type Fibroblast
Transformant Untransformed
Race White
Family Member 1
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Cystic fibrosis & clinically documented nephropathic cystinosis; growth difficulty; recurrent pneumonias; hyponatremia & other electrolyte abnormalities; renal disease; cystine crystals in cornea; 46,XY; donor subject is a compound heterozygote: one allele carries the deltaF508 deletion mutation (PHE508DEL) and a second allele carries a G-to-T substitution at nucleotide 406 (406G>T) which converts the glu-92 codon (GAA) to a stop codon (TAA), resulting in a nonsense mutation in exon 4 in the CFTR gene [GLU92TER (E92X)]

Characterizations

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Passage Frozen 9
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by Nucleoside Phosphorylase and Glucose-6-Phosphate Dehydrogenase Isoenzyme Electrophoresis and by Chromosome Analysis
 
Gene CFTR
Chromosomal Location 7q31.2
Allelic Variant 1 602421.0001; CYSTIC FIBROSIS
Identified Mutation PHE508DEL; Deletion of codon 508 (CTT) in exon 10 leads to deletion of phenylalanine-508 (delta-F508).
 
Gene CFTR
Chromosomal Location 7q31.2
Allelic Variant 2 602421.0082; CYSTIC FIBROSIS
Identified Mutation GLU92TER; In each of 4 German patients with cystic fibrosis, Will et al. [J. Clin. Invest. 93: 1852-1859 (1994)] found a G-to-T transversion that affected the first base of exon 4 and created a termination codon glu92-to-ter. Lymphocyte RNA of patients heterozygous for the E92X mutation were found to contain the wildtype sequence and a differentially spliced isoform lacking exon 4. On the other hand, RNA derived from nasal epithelial cells of these patients showed a third fragment of longer length. Sequencing revealed the presence of E92X and an additional 183-bp fragment, inserted between exons 3 and 4. The 183-bp sequence was mapped to intron 3 of the CFTR gene. It was flanked by acceptor and donor splice sites. Will et al. [J. Clin. Invest. 93: 1852-1859 (1994)] concluded that the 183-bp fragment in intron 3 is a cryptic CFTR exon that can be activated in epithelial cells by the presence of the E92X mutation. E92X abolishes correctly spliced CFTR mRNA and leads to severe cystic fibrosis.

Phenotypic Data

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Remarks Cystic fibrosis & clinically documented nephropathic cystinosis; growth difficulty; recurrent pneumonias; hyponatremia & other electrolyte abnormalities; renal disease; cystine crystals in cornea; 46,XY; donor subject is a compound heterozygote: one allele carries the deltaF508 deletion mutation (PHE508DEL) and a second allele carries a G-to-T substitution at nucleotide 406 (406G>T) which converts the glu-92 codon (GAA) to a stop codon (TAA), resulting in a nonsense mutation in exon 4 in the CFTR gene [GLU92TER (E92X)]

External Links

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dbSNP dbSNP ID: 21330
Gene Cards CFTR
Gene Ontology GO:0005216 ion channel activity
GO:0005224 ATP-binding and phosphorylation-dependent chloride channel activity
GO:0005260 channel-conductance-controlling ATPase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005624 membrane fraction
GO:0005887 integral to plasma membrane
GO:0006811 ion transport
GO:0007585 respiratory gaseous exchange
GO:0016323 basolateral plasma membrane
GO:0016324 apical plasma membrane
GO:0030165 PDZ domain binding
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
NCBI Gene Gene ID:1080
NCBI GTR 219700 CYSTIC FIBROSIS; CF
602421 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; CFTR
OMIM 219700 CYSTIC FIBROSIS; CF
602421 CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; CFTR
Omim Description CYSTIC FIBROSIS; CF
  MUCOVISCIDOSIS

Culture Protocols

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Passage Frozen 9
Split Ratio 1:4
Temperature 37 C
Percent CO2 5%
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Substrate None specified
Subcultivation Method trypsin-EDTA
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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How to Order
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