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GM22633 LCL from B-Lymphocyte

Description:

POTOCKI-SHAFFER SYNDROME
CHROMOSOME DELETION

Affected:

Yes

Sex:

Male

Age:

3 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Images
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Chromosome Abnormalities
Heritable Diseases
dbGaP
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Relation to Proband proband
Confirmation Karyotypic analysis after cell line submission to CCR
ISCN 46,XY,del(11)(p12p11.1).arr 9q32(115997779-116485100)x3,11p12p11.12(41464726-50569977)x1
Species Homo sapiens
Common Name Human
Remarks Clinically affected; paternal origin of the deletion; parietal foramen; brachycephaly; microcephaly; sparse lateral eyebrows; prominent nasal bridge; prominent nose; short philtrum; downturned mouth; short stature; brachydactyly; cryptorchidism; mild enlargement of cerebrospinal fluid spaces; sensorineural hearing loss

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin confirmed by LINE assay
 
Cytogenetics Chromosome 11: DELETION Aneuploid Segment (+)11p12->11p11.2

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 3 YR
Sex Male
 
Data Elements
Clinical Element Type: Potocki-Shaffer Syndrome
  (Baseline)
Inheritance
Parental origin of del(11)  Paternal
Skull
Parietal foramen  Yes
Brachycephaly  Yes
Turricephaly  Unknown
Craniofacial dysostosis  Unknown
Microcephaly  Yes
Large fontanel  No
Facial
Aniridia  No
Sparse lateral eyebrows  Yes
Epicanthal folds  No
Prominent nasal bridge  Yes
Prominent nose  Yes
Short philtrum  Yes
Downturned mouth  Yes
Protuberant ears  No
Skeletal
Short stature  Yes
Multiple exostoses  No
Scoliosis  No
Osteochondroma  No
Limbs
Cutaneous syndactyly between fingers 2 and 5  Unknown
Brachydactyly  Yes
Neurological
Developmental delay/mental retardation  Yes
Central nervous system malformation  No
Corpus callosum  Unknown
Sensorineural hearing loss  Yes
Genitourinary
Hypospadias  No
Cryptorchidism  Yes
Micropenis  Unknown
Renal malformation  No
Wilms tumor  Unknown
Remarks Clinically affected; paternal origin of the deletion; parietal foramen; brachycephaly; microcephaly; sparse lateral eyebrows; prominent nasal bridge; prominent nose; short philtrum; downturned mouth; short stature; brachydactyly; cryptorchidism; mild enlargement of cerebrospinal fluid spaces; sensorineural hearing loss

Publications

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Tang Z, Berlin DS, Toji L, Toruner GA, Beiswanger C, Kulkarni S, Martin CL, Emanuel BS, Christman M, Gerry NP, A dynamic database of microarray-characterized cell lines with various cytogenetic and genomic backgrounds G3 (Bethesda, Md)3:1143-9 2013
PubMed ID: 23665875
 
Wakui K, Gregato G, Ballif BC, Glotzbach CD, Bailey KA, Kuo PL, Sue WC, Sheffield LJ, Irons M, Gomez EG, Hecht JT, Potocki L, Shaffer LG, Construction of a natural panel of 11p112 deletions and further delineation of the critical region involved in Potocki-Shaffer syndrome European journal of human genetics : EJHG13:528-40 2005
PubMed ID: 15852040

External Links

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NCBI GTR 601224 POTOCKI-SHAFFER SYNDROME
OMIM 601224 POTOCKI-SHAFFER SYNDROME
Omim Description DEFECT 11 CONTIGUOUS GENE SYNDROME

Images

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View karyotype 
MicroArray The deletion 11 includes the EXT2 and ALX4 genes
MicroArray KaryotView of the copy number segment changes detected by the Affymetrix Genome Wide Human SNP Array 6.0

Culture Protocols

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Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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How to Order
  • Ordering Instructions
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