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GM22555 LCL from B-Lymphocyte

Description:

PROPIONIC ACIDEMIA

Affected:

Yes

Sex:

Female

Age:

5 MO (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Family Member 1
Family History N
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Clinically affected; diagnosed by newborn screen; no family history; normal gut motility; eating by mouth; acute neutropenia; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has an A>G transition at nucleotide 1606 in exon 15 of the PCCB gene (c.1606A>G) resulting in the substitution of aspartic acid for asparagine at codon 536 [Asn536Asp (N536D)] and the second allele has a 1 bp deletion (1209+2delT)

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin confirmed by LINE assay
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 1 N536D; PROPIONIC ACIDEMIA
Identified Mutation ASN536ASP
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 2 ; PROPIONIC ACIDEMIA
Identified Mutation 1209+2delT

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 5 MO
Sex Female
Racial Category White
 
Data Elements
Clinical Element Type: Propionic Acidemia
  (Baseline)
Neonatal Data
Was this child newborn screened? yes   no  unknown 
If yes, was the result prior to hospitalization yes   no  unknown 
Weight at birth in kgs  3.1
Length at birth in cm  50
Was child breast-fed? yes   no  unknown 
If yes, duration in months  1 WEEK
Failure to thrive? yes  no   unknown 
Molecular/Enzyme Laboratory Test Results
Which Gene: PCCA? yes  no   unknown 
Which Gene: PCCB? yes   no  unknown 
Mutations Allele 1  1606A>G
Mutations Allele 2  1209+2DELT
Family History
Are there other family members with PA? yes  no   unknown 
Other affected relatives? yes  no   unknown 
Has the individual passed away? yes  no   unknown 
Clinical Evaluation
Current weight in kgs  6.35
Current height in cms  61.5
Respiratory
Apnea yes  no   unknown 
Tachypnea yes  no   unknown 
Cardiovascular
Cardiomyopathy yes  no  unknown  
Long QT? yes  no  unknown  
If yes, type  No Data
Abdominal/Gastrointestinal
Pancreatitis chronic  acute  never noted  
Kidney problems yes  no   unknown 
Liver transplant yes  no   unknown 
Port-a-cath currently in place  not currently in place  never had one  
Gut motility normal   slow  requires medication  unknown 
Reflux yes  no   unknown 
Eating by mouth  100%
Tube fed yes  no   unknown 
Vomiting  infrequently
Are anti-emetics used for vomiting yes  no   unknown 
Neurologic
Basal ganglia damage yes  no   unknown 
If yes, determined by  No Data
Seizures yes  no   unknown 
Autism spectrum disorder yes  no   unknown 
ADD/ADHD yes  no   unknown 
Optic nerve damage yes  no   unknown 
Neutropenia chronic  acute   unknown 
Anemia yes  no  unknown  
Immune deficiency yes  no  unknown  
Treated with IVIG yes  no   unknown 
Low platelets chronic  acute  not applicable   unknown 
Asthma yes  no  unknown  
Secondary hip dysplasia yes  no   unknown 
Broken bones yes  no   unknown 
Short stature yes  no   unknown 
Growth hormone treatment yes  no   unknown 
Osteoporosis yes  no   unknown 
Developmental Evaluation
Walking  not at all
Language  age appropriate
Congitive ability  age appropriate
IQ known  untested   unsure 
Metabolic
Is the individual biotin responsive yes  no  unknown  
Episodes of ketoacidosis yes  no   unknown 
Chronic hyperammonemia yes  no   unknown 
Is the individual currently on metabolic formula yes   no  unknown 
If yes, which ones SHS XMTVI
Is the individual taking levocarnitine yes   no  unknown 
If yes, mg/kg  100
Other supllements
Remarks Clinically affected; diagnosed by newborn screen; no family history; normal gut motility; eating by mouth; acute neutropenia; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has an A>G transition at nucleotide 1606 in exon 15 of the PCCB gene (c.1606A>G) resulting in the substitution of aspartic acid for asparagine at codon 536 [Asn536Asp (N536D)] and the second allele has a 1 bp deletion (1209+2delT)

Publications

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Yeeok Kang, Seong-Hyeuk Nam, Kyung Sun Park, Yoonjung Kim, Jong-Won Kim, Eunjung Lee, Jung Min Ko, Kyung-A Lee and Inho ParkEmail, DeviCNV: detection and visualization of exon-level copy number variants in targeted next-generation sequencing data BMC Bioinformatics19: 2018
PubMed ID: 30326846

External Links

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NCBI GTR 606054 PROPIONIC ACIDEMIA
OMIM 606054 PROPIONIC ACIDEMIA
Omim Description PROPIONIC ACIDEMIA

Culture Protocols

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Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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