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GM28010 Fibroblast

Description:

LEIGH SYNDROME; LS
SURFEIT 1; SURF1

Affected:

Yes

Sex:

Male

Age:

8 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Race White
Ethnicity Not Hispanic/Latino
Ethnicity German, Scottish, Welsh
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
ISCN 46,XY[20]
Species Homo sapiens
Common Name Human
Remarks See "Phenotypic Data" tab; iPSC line is GM28862; unaffected carrier mother is GM28009 (fibro);

Characterizations

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PDL at Freeze 9
Passage Frozen 3
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 1 p.Arg192Trp; LEIGH SYNDROME
Identified Mutation c.574C>T (p.Arg192Trp)
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 2 185620.0003; LEIGH SYNDROME
Identified Mutation c.312_321del10insAT (p.Leu105*)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 8 YR
Sex Male
Age of Onset(If not a control) 23 MO
Age at Diagnosis(If not a control) 28 MO
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  NUCLEAR GENE PANEL SEQUENCING AND DELETION/DUPLICATION ANALYSIS OF THE BLOOD REVEALED THAT THIS INDIVIDUAL IS COMPOUND HETEROZYGOUS WITH TWO DISEASE-CAUSING MUTATIONS IN THE SURF1 GENE (NM_003172.2): C.574 C>T (P.ARG192TRP) IN EXON 6, AND C.312_321DEL10INSAT (P.LEU105X) IN EXON 4
Zygosity:  Compound Heterozygous
Other variants:  HETEROZYGOUS FOR A LIKELY DISEASE-CAUSING VARIANT IN RARS2, C.1366 C>T (P.ARG456CYS) AND A VARIANT OF UNKNOWN SIGNIFICANCE, NUBPL C.545T>C (P.VAL182ALA)
Age of Symptom Onset and Age at Diagnosis
Age at Diagnosis:  DIAGNOSED BY A NEUROLOGIST AT 28 MONTHS OF AGE; DIAGNOSED WITH LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX IV DEFICIENCY
In Utero History Information
Birth History Information
Failure to thrive
Dysmorphic Features
Neurological Symptoms
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Neurological Testing:  MRI - LESIONS ON BRAINSTEM AND BASAL GANGLIA; AREAS OF ABNORMAL T2 SIGNAL WITH NECROSIS IN THE BRAINSTEM AND BASAL GANGLIA CONSISTENT WITH CT FINDINGS SUGGESTIVE OF METABOLIC DISEASE - LEIGH SYNDROME MITOCHONDRIAL DISEASE
Metabolic, Hematologic, and Endocrinologic Testing:  MR SPECTROSCOPY STUDY SHOWED SMALL INVERTED PEAK, POSSIBLY LACTATE; 1.15 NAA TO CREATINE RATIO; 1.32 NAA TO CHOLINE RATIO; 0.78 CHOLINE TO CREATINE RATIO; THE BRAIN HAS MYELINATED ALONG THE APPROPRIATE AND EXPECTED MILESTONES FOR THE AGE; NO HEMORRHAGE PRODUCTS, NORMAL VENTRICLES, NORMAL FLOW-VOIDS IN INTRACRANIAL VESSELS, CORPUS CALLOSUM AND HYPOTHALAMIC PITUITARY AXIS ARE NORMALLY FORMED; NORMAL-APPEARING OPTIC APPARATUS, MILD SCATTERED MUCOSAL THICKENING OF THE PARANASAL SINUSES; MINIMAL RIGHT MASTOID FLUID, FENESTRATION IN THE DESCENDING SAGITTAL SINUS
Uncategorized Testing:  SURGERIES: G-TUBE PLACEMENT, TONSILLECTOMY, ADENOID REMOVAL
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Wheelchair or ambulation devices
Additional Testing:  OTHER THERAPY - PSYCHOLOGICAL THERAPY; ASSISTIVE DEVICE: BRACES
Medications
Family History
 UNAFFECTED MOTHER IS GM28009
Remarks See "Phenotypic Data" tab; iPSC line is GM28862; unaffected carrier mother is GM28009 (fibro);

External Links

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Gene Cards MTATP6
SURF1
Gene Ontology GO:0004129 cytochrome-c oxidase activity
GO:0005739 mitochondrion
GO:0005746 mitochondrial electron transport chain
GO:0006118 electron transport
GO:0008535 cytochrome c oxidase biogenesis
GO:0009060 aerobic respiration
GO:0016021 integral to membrane
GO:0019866 inner membrane
NCBI Gene Gene ID:6834
NCBI GTR 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
OMIM 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
Omim Description LEIGH SYNDROME
  NECROTIZING ENCEPHALOPATHY, INFANTILE SUBACUTE, OF LEIGH; SNE

Culture Protocols

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Cumulative PDL at Freeze 9
Passage Frozen 3
Split Ratio 1:5
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagles Minimum Essential Medium with Earle's salts:Dulbecco's modified MEM with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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